Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00435 ATGAAGAGAGAAAGAGAGATAGAACAAAGTTTCACAATTGGCAACTGTTTGAAGTTTCTCCCTCAGAGAACCAAATTAGAAGCCTTCTCATATTTTAGTCCGTCTAGTACCGAACGTGTGTTTGAGTGCAAGACATGTAACAAGCACTTCCCTTCATTTCAAGCACTTGGAGGTCATAGGGCTAGCCACAAGAAACCTAAGTTTGTGGATGGAAACGTTGAGACGATCCAGATGAATCCATCAACGGTCAAACCAAAGACGCATGAGTGCTCCATCTGTGGTCTGGAGTTTTCTATTGGTCAGGCTTTAGGTGGTCATATGAGGAGACACAGAGCTGCAGCTTTGAATGATATTGAACATGTACGAGAAGATCCTATGGCTATGAGTAGTGGTGTCCCAGCTATGAAGAAGAATAGTGATAGGGTTTTGCTAGATTTGAATTTGACACCATTGGAGAATAATTTGGAGTTGCTAAAGCTTGGAAAGGTTGCACAGCCTGCAGCTTTGATAGATTGCTTCTTATGA 525 0.421 MKREREIEQSFTIGNCLKFLPQRTKLEAFSYFSPSSTERVFECKTCNKHFPSFQALGGHRASHKKPKFVDGNVETIQMNPSTVKPKTHECSICGLEFSIGQALGGHMRRHRAAALNDIEHVREDPMAMSSGVPAMKKNSDRVLLDLNLTPLENNLELLKLGKVAQPAALIDCFL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00435 174 Gene3D Classic Zinc Finger 35 122 - -
Pte4g00435 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Pte4g00435 174 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Pte4g00435 174 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Pte4g00435 174 SUPERFAMILY beta-beta-alpha zinc fingers 39 110 IPR036236 -
Pte4g00435 174 PANTHER ZINC FINGER PROTEIN ZAT5 33 153 - -
Pte4g00435 174 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Pte4g00435 174 SMART c2h2final6 41 63 IPR013087 -
Pte4g00435 174 SMART c2h2final6 88 110 IPR013087 -
Pte4g00435 174 Pfam C2H2-type zinc finger 88 112 - -
Pte4g00435 174 Pfam C2H2-type zinc finger 40 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00435 Pte-Chr4 30973059 30973951 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00435 1 166 C2H2 Transcription Factor Family AT2G37430 46.286 2.12e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte4g00435 zf-C2H2_6 3.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00435 - - gmx:100781134 168.703