Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte4g00431 | ATGGTCTTAAGTAACAAGAAATTAAAGCAGAAAATCAGGGAAGAGTTAGCTAAATCCCCAGCTAATAAGCAGACTGATGCACAAAACGGCACATCTAACGACAACCTAAGACAACCACAGCTCAATCAACAGTCTCAGGTTCTGTCTTCTTTCAAAAATCTCTTAGAATCATCTACTCGAAGACCCAAGCTGTCAAAGAGAGAGATACGCAGAAAAAATGTTCCTTCGCGTGGTTCAGAGGCTGTAGTGGCAGCAGCAGAATATGATGACGGTTGTGGACATTCTGCTGATAATAATGGAAAACGGGATAAAGGGGCTGAGGAAATGGAAAGAAGTGGCCACGTAGTGGAGGGATTGGGTGAGAAGACCCAGAAAAAGAAGCAGAAGAGGAAAAGGAGCGAAAAGGAGGTTGTGGGAGATGGAGGGTTGGATTCAGAAGGAACTGGGGATTTAGTAAATCGGGAGGAAACAGAGGAGAGGAGTGAGAAAAAGGGTAAGAAAAAGAGGAAGAAGAAGAAGACGAAGGAGAAGAAGAAGAAAGAGATGGCCAAGAGTGTAGTAGACAAGGGTACTGAGCATGGAGGTGGGGAAGGAACGGAGAAAGAGCTAGAATCAAATGACAATAGTACCAGACAAGACAACGGAAACGTCCCTTCTAAAGTTTATGTTGGAGGCATTCCATATTATTCAACTGAAGATGACATTAGAAGTTATTTTGAAGGCTGTGGAACCATAACTGAGGTTGATTGCATGATGTTTCCTGAAACTGGGAATTTCAGAGGAATTGCTATTATTAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCTTTGGCCCTTGATGGAGCTGATATGGGTGGGCTGTTTCTCAAAATTCAGCCTTATAAAGTGAAACGAGCCAATAAAACATCTGATTTTGCCCCAGAAATCAAGGAAGGCTACAATAGAGTTTATGTTGGAAATTTGCCGTGGGATATAACTGAAGATGAACTGAGGACATTCTTCTCTGGTTGTAACATATCGTCCATGCGTTTTGGTATGGATAAAGAGACAGGAACCTTCAAAGGCTTTGCTCATGTTGATTTTTCAGATAATGAATCACTGACAAAAGCTCTGAAATTGGACCAAAAGATATTGTCTGGAAGAAATGTTGTAATAAGAGGTGCAGTTCCTTTAAAGAAAGCCAACAACAATGCAAGCTCACTGCCTCTCAATGAAGCAGCCACCCATGGTGAACCAAGTTCTGTAAGTGGCAAACTGAGGAGAAGGACATGCTTCGTATGTAAAAAGAAAGGCCATGAATTCTCAAACTGTCCATCTCTTGCAGAATCAAAAGCTCAGCCAGCTGATACACTCCCTCCAAAAGAAGCTACCAATGATAAATTGGCTTTCGTTAGTGGTAAAGCGAGGAGGAGGACATGCTTTCTATGTAAACAGAAAGGGCATGAATCATCCACTTGTCCAACTCTCGTAGAAAGCGGCTGA | 1482 | 0.4224 | MVLSNKKLKQKIREELAKSPANKQTDAQNGTSNDNLRQPQLNQQSQVLSSFKNLLESSTRRPKLSKREIRRKNVPSRGSEAVVAAAEYDDGCGHSADNNGKRDKGAEEMERSGHVVEGLGEKTQKKKQKRKRSEKEVVGDGGLDSEGTGDLVNREETEERSEKKGKKKRKKKKTKEKKKKEMAKSVVDKGTEHGGGEGTEKELESNDNSTRQDNGNVPSKVYVGGIPYYSTEDDIRSYFEGCGTITEVDCMMFPETGNFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKVKRANKTSDFAPEIKEGYNRVYVGNLPWDITEDELRTFFSGCNISSMRFGMDKETGTFKGFAHVDFSDNESLTKALKLDQKILSGRNVVIRGAVPLKKANNNASSLPLNEAATHGEPSSVSGKLRRRTCFVCKKKGHEFSNCPSLAESKAQPADTLPPKEATNDKLAFVSGKARRRTCFLCKQKGHESSTCPTLVESG* | 494 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte4g00431 | 493 | Gene3D | - | 306 | 400 | IPR012677 | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 164 | 179 | - | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 1 | 219 | - | - | |
Pte4g00431 | 493 | Gene3D | - | 412 | 489 | - | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 149 | 163 | - | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 180 | 208 | - | - | |
Pte4g00431 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 314 | 390 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | SUPERFAMILY | Retrovirus zinc finger-like domains | 413 | 444 | IPR036875 | GO:0003676|GO:0008270 | |
Pte4g00431 | 493 | SMART | rrm1_1 | 315 | 386 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | SMART | rrm1_1 | 220 | 292 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | SMART | c2hcfinal6 | 472 | 488 | IPR001878 | GO:0003676|GO:0008270 | |
Pte4g00431 | 493 | SMART | c2hcfinal6 | 423 | 439 | IPR001878 | GO:0003676|GO:0008270 | |
Pte4g00431 | 493 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 219 | 296 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 21 | 58 | - | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 59 | 75 | - | - | |
Pte4g00431 | 493 | CDD | RRM1_PHIP1 | 221 | 292 | IPR034361 | - | |
Pte4g00431 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 316 | 383 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 221 | 287 | IPR000504 | GO:0003723 | |
Pte4g00431 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 307 | 392 | IPR035979 | GO:0003676 | |
Pte4g00431 | 493 | Gene3D | - | 148 | 305 | IPR012677 | - | |
Pte4g00431 | 493 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 121 | 297 | - | - | |
Pte4g00431 | 493 | SUPERFAMILY | Retrovirus zinc finger-like domains | 468 | 489 | IPR036875 | GO:0003676|GO:0008270 | |
Pte4g00431 | 493 | SUPERFAMILY | RNA-binding domain, RBD | 211 | 301 | IPR035979 | GO:0003676 | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 94 | 124 | - | - | |
Pte4g00431 | 493 | MobiDBLite | consensus disorder prediction | 438 | 457 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte4g00431 | Pte-Chr4 | 30706345 | 30710217 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte4g00431 | 239 | 387 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 29.487 | 5.79e-06 | 47.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte4g00431 | - | - | pmum:103332606 | 419.853 |