Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00431 ATGGTCTTAAGTAACAAGAAATTAAAGCAGAAAATCAGGGAAGAGTTAGCTAAATCCCCAGCTAATAAGCAGACTGATGCACAAAACGGCACATCTAACGACAACCTAAGACAACCACAGCTCAATCAACAGTCTCAGGTTCTGTCTTCTTTCAAAAATCTCTTAGAATCATCTACTCGAAGACCCAAGCTGTCAAAGAGAGAGATACGCAGAAAAAATGTTCCTTCGCGTGGTTCAGAGGCTGTAGTGGCAGCAGCAGAATATGATGACGGTTGTGGACATTCTGCTGATAATAATGGAAAACGGGATAAAGGGGCTGAGGAAATGGAAAGAAGTGGCCACGTAGTGGAGGGATTGGGTGAGAAGACCCAGAAAAAGAAGCAGAAGAGGAAAAGGAGCGAAAAGGAGGTTGTGGGAGATGGAGGGTTGGATTCAGAAGGAACTGGGGATTTAGTAAATCGGGAGGAAACAGAGGAGAGGAGTGAGAAAAAGGGTAAGAAAAAGAGGAAGAAGAAGAAGACGAAGGAGAAGAAGAAGAAAGAGATGGCCAAGAGTGTAGTAGACAAGGGTACTGAGCATGGAGGTGGGGAAGGAACGGAGAAAGAGCTAGAATCAAATGACAATAGTACCAGACAAGACAACGGAAACGTCCCTTCTAAAGTTTATGTTGGAGGCATTCCATATTATTCAACTGAAGATGACATTAGAAGTTATTTTGAAGGCTGTGGAACCATAACTGAGGTTGATTGCATGATGTTTCCTGAAACTGGGAATTTCAGAGGAATTGCTATTATTAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCTTTGGCCCTTGATGGAGCTGATATGGGTGGGCTGTTTCTCAAAATTCAGCCTTATAAAGTGAAACGAGCCAATAAAACATCTGATTTTGCCCCAGAAATCAAGGAAGGCTACAATAGAGTTTATGTTGGAAATTTGCCGTGGGATATAACTGAAGATGAACTGAGGACATTCTTCTCTGGTTGTAACATATCGTCCATGCGTTTTGGTATGGATAAAGAGACAGGAACCTTCAAAGGCTTTGCTCATGTTGATTTTTCAGATAATGAATCACTGACAAAAGCTCTGAAATTGGACCAAAAGATATTGTCTGGAAGAAATGTTGTAATAAGAGGTGCAGTTCCTTTAAAGAAAGCCAACAACAATGCAAGCTCACTGCCTCTCAATGAAGCAGCCACCCATGGTGAACCAAGTTCTGTAAGTGGCAAACTGAGGAGAAGGACATGCTTCGTATGTAAAAAGAAAGGCCATGAATTCTCAAACTGTCCATCTCTTGCAGAATCAAAAGCTCAGCCAGCTGATACACTCCCTCCAAAAGAAGCTACCAATGATAAATTGGCTTTCGTTAGTGGTAAAGCGAGGAGGAGGACATGCTTTCTATGTAAACAGAAAGGGCATGAATCATCCACTTGTCCAACTCTCGTAGAAAGCGGCTGA 1482 0.4224 MVLSNKKLKQKIREELAKSPANKQTDAQNGTSNDNLRQPQLNQQSQVLSSFKNLLESSTRRPKLSKREIRRKNVPSRGSEAVVAAAEYDDGCGHSADNNGKRDKGAEEMERSGHVVEGLGEKTQKKKQKRKRSEKEVVGDGGLDSEGTGDLVNREETEERSEKKGKKKRKKKKTKEKKKKEMAKSVVDKGTEHGGGEGTEKELESNDNSTRQDNGNVPSKVYVGGIPYYSTEDDIRSYFEGCGTITEVDCMMFPETGNFRGIAIISFKTEAAAKRALALDGADMGGLFLKIQPYKVKRANKTSDFAPEIKEGYNRVYVGNLPWDITEDELRTFFSGCNISSMRFGMDKETGTFKGFAHVDFSDNESLTKALKLDQKILSGRNVVIRGAVPLKKANNNASSLPLNEAATHGEPSSVSGKLRRRTCFVCKKKGHEFSNCPSLAESKAQPADTLPPKEATNDKLAFVSGKARRRTCFLCKQKGHESSTCPTLVESG* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00431 493 Gene3D - 306 400 IPR012677 -
Pte4g00431 493 MobiDBLite consensus disorder prediction 164 179 - -
Pte4g00431 493 MobiDBLite consensus disorder prediction 1 219 - -
Pte4g00431 493 Gene3D - 412 489 - -
Pte4g00431 493 MobiDBLite consensus disorder prediction 149 163 - -
Pte4g00431 493 MobiDBLite consensus disorder prediction 180 208 - -
Pte4g00431 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 390 IPR000504 GO:0003723
Pte4g00431 493 SUPERFAMILY Retrovirus zinc finger-like domains 413 444 IPR036875 GO:0003676|GO:0008270
Pte4g00431 493 SMART rrm1_1 315 386 IPR000504 GO:0003723
Pte4g00431 493 SMART rrm1_1 220 292 IPR000504 GO:0003723
Pte4g00431 493 SMART c2hcfinal6 472 488 IPR001878 GO:0003676|GO:0008270
Pte4g00431 493 SMART c2hcfinal6 423 439 IPR001878 GO:0003676|GO:0008270
Pte4g00431 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 219 296 IPR000504 GO:0003723
Pte4g00431 493 MobiDBLite consensus disorder prediction 21 58 - -
Pte4g00431 493 MobiDBLite consensus disorder prediction 59 75 - -
Pte4g00431 493 CDD RRM1_PHIP1 221 292 IPR034361 -
Pte4g00431 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 316 383 IPR000504 GO:0003723
Pte4g00431 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 221 287 IPR000504 GO:0003723
Pte4g00431 493 SUPERFAMILY RNA-binding domain, RBD 307 392 IPR035979 GO:0003676
Pte4g00431 493 Gene3D - 148 305 IPR012677 -
Pte4g00431 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 121 297 - -
Pte4g00431 493 SUPERFAMILY Retrovirus zinc finger-like domains 468 489 IPR036875 GO:0003676|GO:0008270
Pte4g00431 493 SUPERFAMILY RNA-binding domain, RBD 211 301 IPR035979 GO:0003676
Pte4g00431 493 MobiDBLite consensus disorder prediction 94 124 - -
Pte4g00431 493 MobiDBLite consensus disorder prediction 438 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00431 Pte-Chr4 30706345 30710217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00431 239 387 Eukaryotic Initiation Factors Gene Family AT1G22760 29.487 5.79e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00431 - - pmum:103332606 419.853