Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00421 ATGTCATCTCGCGTTGTAGCAGCAAATACCTCACCTGTCAGAGATACGACGGGGTTTTACAATCTCATGGAACTCAATGACCTCTCGCGCTCCTCCATTGTCGACGCATCGCCAACACTCGGGCAGCTCTTGAAACGTGTCGGTGATGCACGAAAAGAGGCCACTGGTGACGGTAGCGAAACCCCCATGCACCACGCTCTTGACGTGGCAGACGGAAGCCTCGACCCGCGTTCGCTTCCCTTTGTGCTCGCTTTCAACAGTCTCACTTATAGTGTCAAGGTCCAAAGGAAACTGGGTGTTCCGGCGATGTTTCAACGTGGCAGGAACCGTCTTGGAGCATCCGTCACCATTGCTGAACCAGTCGCCGGAGAGAGCTTGTTTACGAGAACCAAAACCCTCCTCAATGATATCTCAGGTGAAGCCCATGACGGCGAGATTGTCGCTGTTCTTGGAGCCAGTGGGTCCGGAAAATCAACTCTGATCGATGCTTTGGCCAATAGAATCGCCAAAGGAAGCTTGAAAGGAACTGTTACCTTAAATGGCGAGGTCCTGGAGTCGCGACTTTTGAAAGTGATTTCTGCTTATGTAATGCAGGATGACTTGTTGTTCCCTATGCTTACAGTCGAAGAAACACTCATGTTCGCTGCGGAGTTTAGATTGCCTCGTACGTTGTCCAAATCAAAGAAGAAAATGAGAGTGCAGGCTTTGATCGATCAACTAGGCCTCAGAAATGCTGCAAAAACTATCATCGGCGATGAAGGCCACCGTGGAGTCTCTGGTGGAGAACGTCGTCGTGTTTCCATTGGGATAGATATAATTCATGACCCCATCATTCTGTTCCTTGACGAGCCAACATCCGGACTTGACTCAACGAGTGCATTCATGGTGGTCAAAGTGTTGCAGAGAATTGCTCAAAGTGGAAGCATAGTAATCATGTCCGTGCACCAACCAAGTTACCGTATTCTGGGTCTTCTTGACCGGTTAATCTTTCTGTCAAGAGGGCAAACAGTTTACAGTGGCTCACCATCACAGCTTCCATTGTTTTTTGCTGAATTCGGACATCCCATACCCGAGAATGAGAACCGAACAGAGTTTGCTTTGGACTTGATACGTGAACTGGAAGGTTCACCTGGAGGAACTAAAAGCTTGGTGGAATTCAACAGAACATGGCAAAGCATGAAGCAATCAAATTCAGGATACACAGGAGGAGCAAGATACGGTAGTGGTGGCCTGTCGTTGAAAGAAGCAATCAGTGCAAGTATATCTAGAGGGAAATTGGTTTCAGGTGCTACAAACAACACCACAAGCCCAAGTTCTATGGTGCCAATATTTGCCAACCCTTTCTGGATAGAGATGGCAGTACTTGCCAAAAGGTCTTTGTTGAACTCTAGAAGAATGCCAGAGTTGTTTGGAATCAGATTGGGTACTGTTATGGTAACTGGATTTATCTTAGCCACGATGTTTTGGCAATTGGACAATTCTCCTAAAGGTGTGCAAGAAAGGTTAGGCTTCTTCGCATTTGCTATGTCTACTACATTCTACACCACTGCTGATGCTCTTCCAGTGTTTCTTCAAGAGCGGTATATCTTCATGAGAGAGACAGCTTACAATGCGTATAGGCGGTCCTCTTATCTCATCTCTCACGCAATTGTGGCATTGCCATCACTAGCTTTCTTGTCATTGGCCTTTGCAGCCACCACCTTCTTCGCAGTAGGGCTTGATGGTGGAATACAAGGATTCTTGTTCTACTTCTTGATCATTTTCGCTTCATTTTGGTCTGGGAATTCGTTTGTTACTTTCCTATCTGGAGTGGTACCCCATGTTATGTTGGGATACACAATTGTCGTGGCAATCTTGGCTTATTTCTTGCTCTTCAGTGGTTTCTTCATCAATAGGGATAGAATTCCAGCATACTGGATTTGGTTTCACTACTTGTCGCTTGTCAAGTACCCATATGAAGCTGTGTTGCATAATGAGTTCAGCGACCCAACAAAATGCTTTGTAAGAGGAGTGCAGATTTTCGACAATACACCACTTGGGGCAGTACCCAATGCATTGAAGCTCAACTTGTTAGATAACATGAGTAAGACTTTAGGCATGAGAATCACAAGTTCGACGTGTTTGACAACTGGTACAGACATATTACAACAACAAGGGGTGACTGATCTGAGCAAGTGGAGCTGTCTGTGGATTACAGTGGCTTGGGGTTTCTTGTTCAGAATCCTGTTTTACTTTTCTTTGTTGCTGGGGAGCAAGAACAAGCGGAGGTGA 2271 0.4606 MSSRVVAANTSPVRDTTGFYNLMELNDLSRSSIVDASPTLGQLLKRVGDARKEATGDGSETPMHHALDVADGSLDPRSLPFVLAFNSLTYSVKVQRKLGVPAMFQRGRNRLGASVTIAEPVAGESLFTRTKTLLNDISGEAHDGEIVAVLGASGSGKSTLIDALANRIAKGSLKGTVTLNGEVLESRLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRTLSKSKKKMRVQALIDQLGLRNAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVYSGSPSQLPLFFAEFGHPIPENENRTEFALDLIRELEGSPGGTKSLVEFNRTWQSMKQSNSGYTGGARYGSGGLSLKEAISASISRGKLVSGATNNTTSPSSMVPIFANPFWIEMAVLAKRSLLNSRRMPELFGIRLGTVMVTGFILATMFWQLDNSPKGVQERLGFFAFAMSTTFYTTADALPVFLQERYIFMRETAYNAYRRSSYLISHAIVALPSLAFLSLAFAATTFFAVGLDGGIQGFLFYFLIIFASFWSGNSFVTFLSGVVPHVMLGYTIVVAILAYFLLFSGFFINRDRIPAYWIWFHYLSLVKYPYEAVLHNEFSDPTKCFVRGVQIFDNTPLGAVPNALKLNLLDNMSKTLGMRITSSTCLTTGTDILQQQGVTDLSKWSCLWITVAWGFLFRILFYFSLLLGSKNKRR* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00421 756 Pfam ABC-2 type transporter 454 660 IPR013525 GO:0016020|GO:0140359
Pte4g00421 756 SMART AAA_5 143 335 IPR003593 GO:0016887
Pte4g00421 756 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 65 742 - -
Pte4g00421 756 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 115 358 IPR003439 GO:0005524
Pte4g00421 756 Gene3D - 124 347 IPR027417 -
Pte4g00421 756 FunFam ABC transporter G family member 6 123 349 - -
Pte4g00421 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 345 IPR027417 -
Pte4g00421 756 Pfam ABC-2 type transporter 315 371 IPR043926 GO:0140359
Pte4g00421 756 ProSitePatterns ABC transporters family signature. 258 272 IPR017871 GO:0005524|GO:0016887
Pte4g00421 756 Pfam ABC transporter 134 286 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00421 Pte-Chr4 29645646 29648120 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00421 133 345 Calmodulin-binding Proteins AT2G36910 28.636 8.20e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00421 K05681 - qsa:O6P43_006042 1232.24