Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00417 ATGGCAAGAATCAAAGTTCACGAGCTCAGGCAGAAGTCGAAAGCCGATCTGTTGAACCAATTGAAGGAACTGAAGGCCGAACTTGCACTTCTCCGGGTTGCCAAAGTTACTGGTGGAGCCCCCAATAAGCTCTCCAAGATAAAGGTGGTGAGGCTGTCCATAGCTCAGGTTCTGACTGTGATCTCTCAGAAGCAGAAGGCAGCTTTGAGGGAGGCATATAAGAACAAGAAGTACAAGCCTCTTGATCTGCGTCCTAAGAAGACGAGAGCTATTCGCCGGAAGCTTTCCAAACACCAGGTATATTTTACTATGGATCTCACAAAAAATTATTTGTATTATCTTTTTTGTTTGGTTATCTTGTTTTGTCGTTTAAATTTTAATTTTAGAAAGACTAGTTGCCAAACTGGTTAG 411 0.4234 MARIKVHELRQKSKADLLNQLKELKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREAYKNKKYKPLDLRPKKTRAIRRKLSKHQVYFTMDLTKNYLYYLFCLVILFCRLNFNFRKTSCQTG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00417 136 FunFam 60S ribosomal protein L35 1 77 - -
Pte4g00417 136 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte4g00417 136 PANTHER 60S RIBOSOMAL PROTEIN L35 1 100 IPR045059 GO:0000463|GO:0022625
Pte4g00417 136 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte4g00417 136 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte4g00417 136 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Pte4g00417 136 NCBIfam 50S ribosomal protein L29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Pte4g00417 136 Coils Coil 7 34 - -
Pte4g00417 136 CDD Ribosomal_L29_HIP 8 64 - -
Pte4g00417 136 Gene3D - 78 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00417 Pte-Chr4 28707884 28709917 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00417 1 113 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 80.531 1.33e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00417 K02918 - rvl:131314800 164.081