Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00403 ATGGATAAAGGAGTGCCCCCCAGTCTTTTTGTAAATGATGGTTCATTCATGGAGAGGTTCAAACAGCTCCAACAAGCGCAGGAAAGGGATAAAGAGAAGACCACCAAATCAGGGGATATTAAAACAAGTAAAATTGTTCCTGGCAGTTTGACTCCAAATCCCTCCTTGAGTAAGACAAATAATATGCAGAAAACATCCCAGATTGCTTCAGGTGGTAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAACTGGTGCCACCCCCTGTGAAACTTGCAAGTGATGAGGATGAAGAAGAAGCTGCCAGTGTTGCGAATGACACAAGGGGTGCACCATCTAAAAGGAAGAAGGTGGGCCAAGCTGAAGGCTCCGAGCAATTATCAGGAGTAGTTGATGTTGCACCACCTTCCCCAAGTGATCCTACAGTAAAGAAAGTTGCTGACAAACTTGCAAGTTTTGTGGCTAAAAATGGAAGACAATTTGAGGATGTTACTCGGCAAAAAAATCCAGGGGATACTCCTTTTAAATTTTTGTTTGATCAAAACTGTGCCGAATACAATTATTATGAATATCGGTTAGCTCAAGAGGAGAAGGATCTTGCACAGACTAGGGAAGCCCAAACATCTCGTAACGGGAGCATGAGCTCATCATCTTCTAGATCGACAAGCAGTTCCAAGAGGTCTACCGATCTTTATTCGAGTTATCAAGTCCCTGCATCTGCTTTATATGAAGGTGTTGAACTTTCTGGTGCTGGTGGAAGTTCAGTTCAGCCACAATCTGACAACACCTATTCTGGCACCCAATCAAGCAATGATTCCTTGGCTATGATGGAGTTCTTCATGAAGAAGGCTGCACAGGAAGAGAAACGGAGACAGCCTAAGCAGTCAAAAGACGAGATGCCACCACCTCCTTCTCTTCAAGGTAAAAAGGGGCATCATATGGGTGATTATATTCCCCCAGAAGAGCTTGACAAGTTCTTGTCTACCTGCAATGATGTGGCTGCACAGAAGGCTGCTAAGGAGGCTGCAGAGAGGGCAAGAATTCAGGCTGATAATGTAGGGCACAGACTCTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGTAGCTCCAACAAGGGTATTTCAGATCCAATCATGGCAGGTGGTGTTAAAGCCAACAATTTGGGTGTTGGCGCTCACAATCCTGGGGAGGTAACTCCTGATGACGACATATATGAGCAATACAAAAAACGTATGATGCTTGGTTATCGGTATAGACCGAACCCCTTGAACAATCCGCGTAAAGCTTACTATTAA 1299 0.4434 MDKGVPPSLFVNDGSFMERFKQLQQAQERDKEKTTKSGDIKTSKIVPGSLTPNPSLSKTNNMQKTSQIASGGKLAFSLKQKSKLVPPPVKLASDEDEEEAASVANDTRGAPSKRKKVGQAEGSEQLSGVVDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDQNCAEYNYYEYRLAQEEKDLAQTREAQTSRNGSMSSSSSRSTSSSKRSTDLYSSYQVPASALYEGVELSGAGGSSVQPQSDNTYSGTQSSNDSLAMMEFFMKKAAQEEKRRQPKQSKDEMPPPPSLQGKKGHHMGDYIPPEELDKFLSTCNDVAAQKAAKEAAERARIQADNVGHRLLSKMGWKEGEGLGSSNKGISDPIMAGGVKANNLGVGAHNPGEVTPDDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00403 432 MobiDBLite consensus disorder prediction 40 73 - -
Pte4g00403 432 Gene3D Surp module 92 200 IPR035967 GO:0003723|GO:0006396
Pte4g00403 432 ProSiteProfiles SURP motif repeat profile. 145 188 IPR000061 GO:0003723|GO:0006396
Pte4g00403 432 MobiDBLite consensus disorder prediction 1 142 - -
Pte4g00403 432 Pfam Surp module 144 194 IPR000061 GO:0003723|GO:0006396
Pte4g00403 432 SMART G-patch_5 347 394 IPR000467 GO:0003676
Pte4g00403 432 MobiDBLite consensus disorder prediction 156 175 - -
Pte4g00403 432 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 306 432 IPR040169 -
Pte4g00403 432 MobiDBLite consensus disorder prediction 251 269 - -
Pte4g00403 432 MobiDBLite consensus disorder prediction 23 39 - -
Pte4g00403 432 MobiDBLite consensus disorder prediction 248 269 - -
Pte4g00403 432 SUPERFAMILY Surp module (SWAP domain) 126 195 IPR035967 GO:0003723|GO:0006396
Pte4g00403 432 MobiDBLite consensus disorder prediction 283 316 - -
Pte4g00403 432 MobiDBLite consensus disorder prediction 204 230 - -
Pte4g00403 432 SMART surpneu2 143 197 IPR000061 GO:0003723|GO:0006396
Pte4g00403 432 ProSiteProfiles G-patch domain profile. 349 396 IPR000467 GO:0003676
Pte4g00403 432 MobiDBLite consensus disorder prediction 199 230 - -
Pte4g00403 432 Pfam G-patch domain 350 393 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00403 Pte-Chr4 27245544 27251647 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00403 345 392 C2H2 Transcription Factor Family AT5G26610 50.000 1.94e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00403 K13096 - qsa:O6P43_001332 578.556