Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00399 ATGATGATATCGAGGGGACTCTTCGGGTGGTCCCCACCGCATATTCAGCCTTTGACGCCGGTTTCTGAAGTGTCGGAGCCGCCGGAGTCGCCGTCGCCCTATTTAGACCAGAGTGCAGATGCCTCGGCTTCCCAACAGGTTGAGGTGGAAGAGGAAATGGAAGAACCTGAAGAGATGGAGCCGCCTCCTGCTGCTGCTCCCTTCTCGAGGCTCTTTGCCTGTGCGGATTGGTTCGATTGGGTGCTTATGATCGTTGGCTCGATCGCCGCTGCCGCACACGGCACGGCTCTTGTTGTGTATTTGCATTATTTTGCGAAGATAGTTCAAGTTATGAAGATGGATGGTCATAATGGGCATAGATTGGAAGACCAGTTTCAGAGGTTTACGGAGCTTGCCTTAACCATAGTTTACATTGCTGGAGGAGTTTTTGTTGCTGGTTGGATTGAGGTTTCGTGCTGGATCTTGACTGGAGAACGGCAGACTGCTGTAATCCGTTCAAAATATGTCCAAGTATTGCTGAACCAAGAAATGAGTTTCTTTGATACATATGGGAATAATGGAGACATTGTCAGTCAAGTACTGAGTGACGTGCTTCTCATTCAGTCGGCTCTTAGTGAAAAGGTTGGAAACTATATCCATAATATGGCCACTTTTTTCAGTGGCCTTGTTATAGGATTTCTTAACTGTTGGCAGATTGCCTTGATCACATTAGGCACTGGTCCATTCATTGTAGCTGCTGGTGGAATTTCTAATATATTCCTTCACAGGCTTGCTGAAAACATTCAGGATGCATATGCTGAAGCAGCTAGCATTGCAGAACAGGCAGTCTCCTATATTAGGACACTCTATGCATTTACAAACGAGACATTGGCCAAGTATTCATATGCAACATCTCTGCAAGCTACTCTTCGATATGGTATATTAATAAGCCTTGTTCAGGGGCTTGGTCTTGGATTTACGTATGGACTTGCCATATGCTCTTGTGCACTACAACTGTGGGTCGGAAGATTTCTGGTTATCCATGGAAAAGCTCATGGCGGTGAAATCATAACAGCCCTATTTGCCATAATTCTAAGTGGCCTTGGACTAAATCAAGCAGCTACAAATTTTTATTCATTCGACCAAGGAAGAATTGCTGCTTACAGACTGTTCGAGATGATAAGCCGGTCATCATCTTCTGTTAACCATGATGGACTTACCCCAGATTCTGTACAGGGAAATATAGAGTTCCGAAATGTATATTTCAGCTACCTTTCTCGTCCTGAGATCCCAATCCTGAGTGGATTTTATCTCACTGTACCTGCTAAGAAAGCTGTAGCACTTGTTGGCCGTAATGGCTCTGGAAAAAGTAGTATTATTCCCCTTATGGAACGCTTTTATGATCCTACATTAGGAGAAGTTCTTTTGGATGGAGAAAATATTAAGAACTTGAAATTGGAATGGCTGAGAAGTCAAATTGGATTAGTTACCCAGGAACCTGCTTTACTCAGTCTCAGCATTAGAGACAATATTGCGTATGGTAGGGATGCTACATTTGATCAGATTGAGGAGGCTGCTAAAATTGCACATGCACATACTTTTATAAGCTCGCTGGAGGAAGGTTATGATACACAGGTGGGGAGGGCTGGGCTGACATTGACTGAGGAGCAGAAGATAAAGCTTTCTATTGCTAGAGCTGTTCTTTTAAACCCTTCAATCCTTTTGCTTGATGAGGTTACTGGTGGGCTTGATTTTGAGGCTGAAAAGGCTGTTCAGGAGGCTTTAGATCTTCTCATGTTGGGACGGTCCACAATCATAATTGCTCGAAGGCTCAGTCTTATAAGAAATGCTGATTATATAGCTGTGATGGAGGAGGGACAGCTTGTTGAGATGGGCACTCATGATGAGTTGTTGCATTTAGATGGTTTGTATGCAGAGCTACTCAGGTGTGAGGAGGCTGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGGAGACAGCTGCTTTCCAAATTGAGAAGGATTCTTCAGCAAGTAATAGTTTCCAAGAACCATCATCGCCTAAAATGATCAAATCTCCTTCTCTCCAGAGAGTTACCGGCATATTCCGGCCATCAGATGGGATGCTCAGTTCACAAGAATCTCCTAAAAACTGTAGCCCACCACCTGAGAAGCTACTGGAAAATGGTCAGGCTGTAGATGCATCAGAGAAGGAGCCATCTATAAGAAGACAGGACAGTTTTGAATTGAGATTGCCTGAGTTGCCTAAGATTGATGTGCACTCTCTGGATCGACAAGCTTCAAAAGGATCTGATCCGGAATCTCCTGTGTCACCCTTGTTGACTTCAGATCCCAAAAGCGAACGCTCTCATTCACAGACCTTTAGTCGTCCTGATGGCAATGCTGATGACATGTCAGTCAAAATAAAGGAAGCTAAAGATGTGAAACATCGAGAACCACCATCATTCTGGAGGCTGGCACAGCTTAGTTTTGCAGAATGGCTTTATGCTGTTCTGGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCTTACGTTATTGCTCTGGTAGTGACAGCATACTATAGAGTAGATGAAGGTCATCACATACATCATGAAGTAGACAAGTGGTGCTTAATTATTGCCTGCATGGGTGTAATTACAGTTGTAGCCAACTTTTTGCAGCATTTCTACTTTGGTATAATGGGTGAGAAAATGACAGAACGTGTACGGAGAATGATGTTTTCAGCTATGCTGCGAAATGAAGTTGGTTGGTTTGATGATGAGGAAAACAGCGCTGATAACTTGTCCATGCGCCTGGCAAATGATGCTACATTTGTACGAGCTGCTTTTAGCAACCGACTTTCCATATTTATACAGGATAGTGCTGCCGTTGTTGTTGCTGTTCTTATTGGCATGTTGCTACAATGGAGACTGGCACTAGTAGCTTTAGCAACTCTTCCGATTCTTACTGTTTCTGCCATTGCACAGAAATTGTGGCTTGCTGGATTTTCAAGGGGAATTCAAGAGATGCACAGGAAAGCATCTTTGGTGCTTGAAGATGCAGTTAGAAATATCTACACTGTTGTAGCATTCTGTGGTGGTAACAAAGTAATGGAGCTCTATAGGTTTCAGCTGAACAAAATATTTACGAAGAGTTTTCTCCATGGAATAGTCATTGGTTTTGCATTTGGTTTTTCACAGTTCCTACTCTTTGCTTGCAATGCGCTTCTCCTTTGGTACACTGCAGTATCAGTTAAAAAAGGTTACATGGATTTAGCAACTGCTCTGAAGGAGTATATGGTTTTTTCTTTTGCAACATTTGCACTAGTGGAACCTTTTGGTCTGGCTCCATATATTCTCAAACGACGTAAGTCTCTAATTTCTGTGTTTGAGATCATAGATAGAGTGCCAAAGATTGATCCTGATGATAATTCTGCATTGAAGCCACCGAATGTCTATGGAAGCATTGAGCTGAAAAATGTTGATTTCTGTTATCCAACTCGTCCAGAAGTATTAGTACTGAGTAATTTCAGTCTAAAAGTAAATGGAGGCCAAACGGTTGCTGTTGTAGGTGTTTCTGGGTCTGGAAAGAGCACTATTATATCTCTCATCGAGAGGTTTTATGATCCAGTGGCTGGACAAGTCCTACTTGATGGGCGTGATTTAAAACAATATAATATGAGATGGCTGAGGAGTCACCTCGGTCTGGTCCAGCAAGAACCTATAATTTTCTCTACAACGATAAGGGAAAACATAATATATGCAAGGCACAATGCTAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCTAACGCTCACCATTTCATTAGCAGCTTGCCTCATGGTTATGACACACATGTGGGAATGAGGGGTGTCGACTTGACTCCAGGACAGAAACAGAGAATAGCAATTGCGCGGGTGGTGCTGAAAAATGCACCTATTTTGCTATTGGATGAAGCAAGCTCATCAATAGAATCTGAGTCCAGCCGAGTGGTACAAGAGGCTCTAGATACACTTATCATGGGTAACAAGACGACCATTCTAATAGCGCATAGGACTGCAATGATGAGACACGTTGACAATATTGTAGTACTTAATGGAGGAAAGATAGTGGAAGAAGGGACACACGATTCATTGGCGGTGAAGAATGGCTTGTATGTCCGATTGATGCAACCACACTTTGGCAAGGGCTTGCGCCAGCATCGACTTATTTAG 4215 0.4318 MMISRGLFGWSPPHIQPLTPVSEVSEPPESPSPYLDQSADASASQQVEVEEEMEEPEEMEPPPAAAPFSRLFACADWFDWVLMIVGSIAAAAHGTALVVYLHYFAKIVQVMKMDGHNGHRLEDQFQRFTELALTIVYIAGGVFVAGWIEVSCWILTGERQTAVIRSKYVQVLLNQEMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGFLNCWQIALITLGTGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHGKAHGGEIITALFAIILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGLTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPAKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDATFDQIEEAAKIAHAHTFISSLEEGYDTQVGRAGLTLTEEQKIKLSIARAVLLNPSILLLDEVTGGLDFEAEKAVQEALDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLHLDGLYAELLRCEEAAKLPKRMPVRNYKETAAFQIEKDSSASNSFQEPSSPKMIKSPSLQRVTGIFRPSDGMLSSQESPKNCSPPPEKLLENGQAVDASEKEPSIRRQDSFELRLPELPKIDVHSLDRQASKGSDPESPVSPLLTSDPKSERSHSQTFSRPDGNADDMSVKIKEAKDVKHREPPSFWRLAQLSFAEWLYAVLGSIGAAIFGSFNPLLAYVIALVVTAYYRVDEGHHIHHEVDKWCLIIACMGVITVVANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVVVAVLIGMLLQWRLALVALATLPILTVSAIAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCGGNKVMELYRFQLNKIFTKSFLHGIVIGFAFGFSQFLLFACNALLLWYTAVSVKKGYMDLATALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDNSALKPPNVYGSIELKNVDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKQYNMRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRTAMMRHVDNIVVLNGGKIVEEGTHDSLAVKNGLYVRLMQPHFGKGLRQHRLI* 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00399 1404 FunFam ABC transporter B family member 20 398 645 - -
Pte4g00399 1404 Gene3D ABC transporter type 1, transmembrane domain 945 1144 IPR036640 GO:0005524|GO:0016020
Pte4g00399 1404 MobiDBLite consensus disorder prediction 668 797 - -
Pte4g00399 1404 SUPERFAMILY ABC transporter transmembrane region 70 388 IPR036640 GO:0005524|GO:0016020
Pte4g00399 1404 Gene3D - 1145 1392 IPR027417 -
Pte4g00399 1404 Gene3D - 398 645 IPR027417 -
Pte4g00399 1404 FunFam ABC transporter B family member 20 70 407 - -
Pte4g00399 1404 Pfam ABC transporter 429 573 IPR003439 GO:0005524
Pte4g00399 1404 Pfam ABC transporter 1173 1321 IPR003439 GO:0005524
Pte4g00399 1404 MobiDBLite consensus disorder prediction 668 688 - -
Pte4g00399 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 375 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g00399 1404 SUPERFAMILY ABC transporter transmembrane region 818 1140 IPR036640 GO:0005524|GO:0016020
Pte4g00399 1404 Gene3D ABC transporter type 1, transmembrane domain 70 661 IPR036640 GO:0005524|GO:0016020
Pte4g00399 1404 MobiDBLite consensus disorder prediction 763 794 - -
Pte4g00399 1404 CDD ABC_6TM_Pgp_ABCB1_D2_like 821 1138 - -
Pte4g00399 1404 MobiDBLite consensus disorder prediction 731 762 - -
Pte4g00399 1404 FunFam ABC transporter B family member 6 772 1000 - -
Pte4g00399 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 832 1124 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g00399 1404 SMART AAA_5 435 614 IPR003593 GO:0016887
Pte4g00399 1404 SMART AAA_5 1182 1369 IPR003593 GO:0016887
Pte4g00399 1404 Coils Coil 254 274 - -
Pte4g00399 1404 MobiDBLite consensus disorder prediction 18 62 - -
Pte4g00399 1404 FunFam ABC transporter B family member 20 1145 1394 - -
Pte4g00399 1404 PANTHER ABC TRANSPORTER B FAMILY 47 844 IPR039421 -
Pte4g00399 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1391 IPR027417 -
Pte4g00399 1404 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 383 - -
Pte4g00399 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 408 643 IPR003439 GO:0005524
Pte4g00399 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1155 1392 IPR003439 GO:0005524
Pte4g00399 1404 Pfam ABC transporter transmembrane region 837 1101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g00399 1404 Pfam ABC transporter transmembrane region 83 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte4g00399 1404 FunFam ABC transporter B family member 6 1002 1152 - -
Pte4g00399 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 642 IPR027417 -
Pte4g00399 1404 MobiDBLite consensus disorder prediction 31 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00399 Pte-Chr4 27030727 27052721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00399 53 701 Calmodulin-binding Proteins AT2G36910 44.495 4.86e-170 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00399 K05658 - qsa:O6P43_005710 2465.26