Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00396 ATGGTGGACACAGACGATGCTCAGACCAATGCACGAGCTCCACCGTGTCAGCTTCCTGGTACGAGTGGGAGGAAAATGTTTTGGCGGTCGGCATCTTGGTCGTCCTCACGCACAGCTACACATAATCCCGCAGATGTGCAAGAGAAAGGTTTTGTAGATCCAGATTCTAATGGGCAACATCGAAGATTTCCCCCAGTTCCCTTAACCCCTCGATCCCAACAGAATTCTAAGGCACGGTCTTCTTTGCCACCGCTGCAACCATTGTCCATTGCACGGCGGAGCTTTGATGAGTGGCCCAAAGCTGGTTCTGACGATATTGGTGAGTGGCCACACCCTCCCACTCCAAGTGGGCGGGCTAGTGGGGAAAGGTTGAAGCTGGATTTGTCATCAATTCAGCAAAACTCGGACAAGAATGTTGGGCTTGTCAAGAGGGAAAAGATTGCTTTCTTCGACAAAGAGTGTTCAAAAGTGGCAGAGCATATATATCTTGGCGGGGATGCTGTTGCTAAGGACAGGGATATACTGAAACAGAATAGGATAACCCATGTTCTAAACTGTGTTGGTTTTGTTTGTCCTGAGTACTTTCAAGGTGATTTTGTGTATAGAACATTGTGGTTGCAGGATAGTCCGACAGAGGATATTACTAGCATATTGTATGATGTCTTTGATTACTTTGAAGATGTTAGAGAACAGGGCGGAAGGGTTTTTGTGCATTGTTGTCAAGGTGTTTCTCGGTCCACATCCTTGGTGATTGCATATATGATGTGGAGGGAAGGGCAAAGTTTTGATGATGCCTTTCAGTATGTGAAGGCGGCAAGAGGCATTGCTGATCCTAATATGGGATTTGCCTGCCAATTGTTACAGTGTCAAAAGAGGGTCCATGCATTTCCACTTAGCCCCAGCTCATTGTTGAGAATGTATAGAATGGCTCCACATTCTCCATATGATCCATTGCATCTTGTCCCGAAAATGTTGAATGATCCCTCTCCATCTGCTCTGGATTCCAGGGGCACTTTTATTGTGCATTCACCGTCTGCAATATACCTCTGGATTGGTAAAAATTGTGAGCCTATTATGGAGAGGGATGCAAGGGGAGCTGTAGGTCAGATTGTTCGATACGAGAAAGTAAAAGGGTCTATTATGACAATTAAGGAGGGCGAAGAACCAGATTACTTTTGGAATGCATTTTCTAATCTTCTGCCGTTGATGGACAAATCTGGAAATGGAGGGAAGACATGTAATTCAGATGTCAAATTATCAGCGGGTCAAAGGAAAGTGGATTTGTATGATGTTGATTTTGAGGTTTTCCAAAAGGCAATCATGGGAGGTTTTGTGCCTCCTTTTGCAGCATCAGAGAACGAACACGAAACCCATCTGCCTGCTAGAGAAAGCAGTTGGAGTGACTTAAGGCGTAAATTTGCCTCTAATGATATGAAGGAATTTGTTTCCGCACCCAAGTTATCTTTTCAAAGGGTTTACTCAGATTCGATGATGGTAGTTCATTCTTCAAGAAAGTTTTCGCCATCTTCATCGTCATGTTCGTCTTCATCTTCACCCCCATATCTTTCCCCTGATTCTATTTCTACTGATTCAAGCAATAATTCAAAATATTTCTCGGAATCATCCTTGGATTCTCCTTCTGCTGTTTCATGTTCTCATCCTGCATCATCCTTGTCTAACTTCTCTAACTTGTCTCTTGTTTCAACAAGATGTTCTACATCCATACCTAACAATACTGAAATTCATAATGTAGATTTGACCTCACTGGCATGTTCTCCATCAGTTTCCTCATTATCAAAAAAAGCTTCACCTTCACTTGCAGAGCGCAGAGGTAGTTTGTCGAAGTCTTTGAAGTTGCCATTAGTAACGGATAAAAAAAGGGTGAGAAATAGTCAATCAAGTTTCCGTTCTGGCCAAGAAGACAATATCATAACAAGTTGCGTTAGAAGCTCTTTAAGTGAGCCTGAGGTAATAGGGAACAAATTGCAAACTGAGGACCATTTTAAATATGGAGAGGGGAATTTGACTCAACAACGTGAATTAGATATATTTCCTGGTTGTTTAACGAATTCTGATTCCTTGAGTAAAAAAGACAGTAGCAATAAAGACCGATGTGAAGATTCACTAGGAGATGGGAGTTTGTCCACTGTGCCGAAAGAAATTGATGGAAGTGATAACATAATATGTAATCTTAGACAAATTTTAGTCTTTCGTTGGCCCAGTTTAGAGAAGATTGCAAAATTTGGGGCAAATGACTTAAATTCTAAGGCTGCTTTCCTTATTTTCTCACCAAGTATGAAGTTAGAGAAAAATGAAGAAAGGGTTCTGTATTTTTGGATAGGAAAATCTTTCAGCCAAGTTAGATTAGATAGTGGTAAAGAGTTAGGTAATCCAGAGGTGATTGGAAAGAGTCCGACTGGTTGTGAAATCCTCACCCAAATAGGCCTGCCAGAGGACACCATCATTAAGGTATGCAATTGTTCTTTACCCACTTTCTATTGCTGTCAATTGTAG 2514 0.4189 MVDTDDAQTNARAPPCQLPGTSGRKMFWRSASWSSSRTATHNPADVQEKGFVDPDSNGQHRRFPPVPLTPRSQQNSKARSSLPPLQPLSIARRSFDEWPKAGSDDIGEWPHPPTPSGRASGERLKLDLSSIQQNSDKNVGLVKREKIAFFDKECSKVAEHIYLGGDAVAKDRDILKQNRITHVLNCVGFVCPEYFQGDFVYRTLWLQDSPTEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAYMMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRMAPHSPYDPLHLVPKMLNDPSPSALDSRGTFIVHSPSAIYLWIGKNCEPIMERDARGAVGQIVRYEKVKGSIMTIKEGEEPDYFWNAFSNLLPLMDKSGNGGKTCNSDVKLSAGQRKVDLYDVDFEVFQKAIMGGFVPPFAASENEHETHLPARESSWSDLRRKFASNDMKEFVSAPKLSFQRVYSDSMMVVHSSRKFSPSSSSCSSSSSPPYLSPDSISTDSSNNSKYFSESSLDSPSAVSCSHPASSLSNFSNLSLVSTRCSTSIPNNTEIHNVDLTSLACSPSVSSLSKKASPSLAERRGSLSKSLKLPLVTDKKRVRNSQSSFRSGQEDNIITSCVRSSLSEPEVIGNKLQTEDHFKYGEGNLTQQRELDIFPGCLTNSDSLSKKDSSNKDRCEDSLGDGSLSTVPKEIDGSDNIICNLRQILVFRWPSLEKIAKFGANDLNSKAAFLIFSPSMKLEKNEERVLYFWIGKSFSQVRLDSGKELGNPEVIGKSPTGCEILTQIGLPEDTIIKVCNCSLPTFYCCQL* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00396 837 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 150 294 IPR029021 -
Pte4g00396 837 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Pte4g00396 837 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Pte4g00396 837 MobiDBLite consensus disorder prediction 68 83 - -
Pte4g00396 837 PANTHER MKPA PROTEIN 9 823 - -
Pte4g00396 837 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Pte4g00396 837 MobiDBLite consensus disorder prediction 1 88 - -
Pte4g00396 837 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Pte4g00396 837 SUPERFAMILY Actin depolymerizing proteins 301 402 - -
Pte4g00396 837 MobiDBLite consensus disorder prediction 27 43 - -
Pte4g00396 837 Gene3D Severin 305 399 IPR029006 -
Pte4g00396 837 MobiDBLite consensus disorder prediction 505 528 - -
Pte4g00396 837 MobiDBLite consensus disorder prediction 100 122 - -
Pte4g00396 837 Gene3D Protein tyrosine phosphatase superfamily 128 295 IPR029021 -
Pte4g00396 837 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Pte4g00396 837 CDD DSP 154 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00396 Pte-Chr4 26612742 26615734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00396 1 189 Protein tyrosine phosphatase (PTP) family AT3G55270 67.016 3.29e-74 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00396 - - qsa:O6P43_005717 1063.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00396 4 26612742 26615734 Pte4g00396 4 26612742 26615734 RCT