Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00387 ATGTGCAGTGGTTCCAAGACGAAACCTTCTCAAGCAGGTTTCGACATGGAAGGTGAATTTTCCAAACAAGATGGATTGCCTCCAAAGTCGTCAGTCTTGTTTGAATTTGCAGCCTCTGATGATTTGATGGGTTTCAAAAATGCTGTTGAGGAAGAGCATCATGATGTTGAGGGGAGAAGTTTGTGGTACGGAAGTAGAATCGGATCAAAGAAAATGGGTTATGAAGAGAGAACACCCCTTATGATTGCTGCTATGTTTGGGAGTAAAGATGTGTTGAGTTATATCCTTGATACGGGTGATGTTGATGTTAATAGGAGTTCCATTTCTGATGGTGCCACTGCTCTCCACTGTGCTGTTGCTGGGTGCTCTAGTTCAGCACCCGATGTTGTCAAACTCTTGCTTAATGCATCTGCTGATGCAAATATTGTGGATGCTAATGGTAATAAACCCTTTGATTTGATTCACTTTGGTGTAAATTCTTGCTTGAATTCGAGGAAGAGGATTATGCAGATCTCATTGGAAGGTGGGAATGGGGTTGAAGAGGCATGCCTATTATCTGAGGTTGGTCTAAAGTGGGAGCAACAACAGCTTAGCTTGGCTATGCCTCGAGTTTCGAAAGATGTGAATGAGAAGAAAGAATATCCGATTGACCCTTCCCTTCCGGACATGAACAATGGGATATATTGCACGGATGAATTTAGGATGTACACTTTCAAGGTGAAACCTTGCTCAAGGGCTTATTCTCACGATTGGACTGAATGCCCCTTTGTTCACCCTGGAGAGAATGCTAGGCGACGTGATCCTTCAAAATACAATTACAGCTGTGTCCCTTGTCCGGAATTTCGGAAGGGTTCATGCAGTAAGGGAGATTCTTGTGATTATGCCCATGGAATATTTGAATGCTGGCTGCACCCCGCTCAGTACCGGACACGCCTTTGCAAGGATGAGACTGGATGTAGCAGAAAGGTGTGTTTCTTTGCGCACAGGCCTGAGGAGCTTCGTCCACTGTATGCTATGACTGGTTCTGCTATGCCTTCTCCGAGGGCACTCTCATCAAAGGATATGGGACCTTTAAACGCTTTTGCTCTTGGGTCACCATCCTTTTCAATACCTCCTTCCACTCCACCTTTATCTCCCTCAGGAGGGGTGTCCTCTAGTATGGGTGCAACCATGTGGCAGAACCATTCTAAAGTCTCTGTACCTTCCTTGCAATTGCCTGGGAGCCGATTGAAAACCAGACACAGTGCTAGAGAAATTAATTTGGATATTGAATTACTTGGCCTTGAACAGCACAGGCAGCAAGTATTGGCTGATGAGATTTCCCATCTCTCCTCCCCATCAAGCTGGAAGAGTTCCATGGCTAATTCTTCACCTTTTGCCAACTCGACTGATCTTACTCGGGATTTTCATAACCTTCGGGGATTGAAGCCTTCTAACCTTGATGATATTTTTGGTTCTATGGATTCATCAATGCTATTACAGTTGCAGGGACTCACACTTGATACTGCAGCGCCTGCGCTATTGTCTCCAACTGAGATGCAGGTGCAGCAGAATGGAATTAAAAAGCTTCACAGTTATACTAGCAACCTAAATCCCTTTCCTATGCCAGTGTCCCCCTTGATGGGGTCACGATCATTTCAGGTTGATTCACCTAGCCCAATTGCTGATGTAGCTGTTATGAATTCAAGAGCTGCAGCCTTCTCAAAGAGAAGTCAGAGCTTCATTGAGCGCAATGGACCAAGCCATCTTTTTGGGCATTCTACTCCTGCTGCCTCTGTGGCATCGAAGCCATCAGCCATCTCTGATTGGGGTTCATCGGATGGGAAGCTGAATTGGGCTGTACAGGGGTATGATTTGCATAAGCTGAGGAAATCTGCTTCTTTTGGATTCCGTAGTAATACTAATTCTGCTAGAGGAACGTCAACAATGCCTATGGCTGCTGAAGAGTCTGATATTTCTTTGGTGCATTCCTTTGTGAAGGATGGCCCCCCAGTAAAATCTAGCCAATATAATGTAGAGGAGCAGCAGCGACAATGCCACACTAACAATGGAACTTCAGATATTCATCCAGCTTGGATGGAGGAACCATTCTATATGGAGCACTAG 2106 0.4516 MCSGSKTKPSQAGFDMEGEFSKQDGLPPKSSVLFEFAASDDLMGFKNAVEEEHHDVEGRSLWYGSRIGSKKMGYEERTPLMIAAMFGSKDVLSYILDTGDVDVNRSSISDGATALHCAVAGCSSSAPDVVKLLLNASADANIVDANGNKPFDLIHFGVNSCLNSRKRIMQISLEGGNGVEEACLLSEVGLKWEQQQLSLAMPRVSKDVNEKKEYPIDPSLPDMNNGIYCTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPSKYNYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYRTRLCKDETGCSRKVCFFAHRPEELRPLYAMTGSAMPSPRALSSKDMGPLNAFALGSPSFSIPPSTPPLSPSGGVSSSMGATMWQNHSKVSVPSLQLPGSRLKTRHSAREINLDIELLGLEQHRQQVLADEISHLSSPSSWKSSMANSSPFANSTDLTRDFHNLRGLKPSNLDDIFGSMDSSMLLQLQGLTLDTAAPALLSPTEMQVQQNGIKKLHSYTSNLNPFPMPVSPLMGSRSFQVDSPSPIADVAVMNSRAAAFSKRSQSFIERNGPSHLFGHSTPAASVASKPSAISDWGSSDGKLNWAVQGYDLHKLRKSASFGFRSNTNSARGTSTMPMAAEESDISLVHSFVKDGPPVKSSQYNVEEQQRQCHTNNGTSDIHPAWMEEPFYMEH* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00387 701 Gene3D - 29 168 IPR036770 -
Pte4g00387 701 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
Pte4g00387 701 Pfam Ankyrin repeats (3 copies) 68 144 IPR002110 GO:0005515
Pte4g00387 701 PANTHER UNKEMPT FAMILY MEMBER 35 661 IPR045234 -
Pte4g00387 701 SMART ANK_2a 110 142 IPR002110 GO:0005515
Pte4g00387 701 SMART ANK_2a 75 105 IPR002110 GO:0005515
Pte4g00387 701 FunFam Zinc finger CCCH domain-containing protein 66 229 298 - -
Pte4g00387 701 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Pte4g00387 701 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Pte4g00387 701 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Pte4g00387 701 SUPERFAMILY Ankyrin repeat 72 164 IPR036770 -
Pte4g00387 701 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Pte4g00387 701 MobiDBLite consensus disorder prediction 1 25 - -
Pte4g00387 701 Gene3D - 273 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00387 Pte-Chr4 25440535 25444047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00387 194 334 C2H2 Transcription Factor Family AT5G07500 57.447 5.49e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte4g00387 Ank_2 1.8e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00387 - - qsa:O6P43_020353 856.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00387 4 25440535 25444047 Pte4g00387 4 25440535 25444047 RCT