Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00383 ATGCTTACTAGATCAATGGAAAATGAGAAAGCTGATGAAGTGAATATCAGTGAGGAAGAAAGAGTTGACAAGGAGCAGAAAGAACTAATACCTTTGTTGACTGGTGGACAGTTGAAGTCTTATCAAATGAAAGGTGTTAAGTGGTTAATTTCATTATGGCAAAATGGGTTAAACGGTATTCTTGCAGATCAAATGGGTCTTGGGAAGACAATCCAAACTATTGGTTTTCTTGCGCACCTGAAAGGCAAAGGGCTGCACGGACCCTATTTAATTATTGCTCCCCTATCTACTCTGTCAAATTGGATGAACGAGATATCCAGGTTTGCACCCTTGCTGACTGCTATTATCTATCATGGAGATAGGAAGCAAAGGGATGAGCTCCGCAGGAAGCATATGCCCAAGTTAATTGGCCAGAAATTTCCAATAATAATCACTTCCTATGAAGTTGCGTTAAATGATGCTAAGAGATACTTAAAGTCTTACAATTGGAAGTATGTTGTTGTTGATGAGGGGCACAGGTTAAAAAATTCAAGTTGCAAGTTAGTGAATGCTCTGAAACTTTTGAATATGGAAAATAAGCTTCTACTGACTGGGACACCTCTTCAAAACAACTTGGCGGAGCTTTGGTCATTATTGAACTTCATTCTGCCCGACATATTCTCATCCCATGAAGAATTCCAGTCATGGTTTGATTTGTCGGGGAAGTGTGGCAGTGAAGCTACAAAGGAAGAAATGGAAGAGAAAAGAAGGTCCCATGTTGTGTCAAAACTCCATGCCATATTGCGGCCCTTTCTTTTGCGTAGAATGAAGGCTGATGTTGAGTGTATGCTACCTCGGAAGAAGGAGATCATTTTGTATGCAAATTTAACTGACCATCAGAAAGATATTGAGCAACATTTGGTTAATAAGACATTAGAGAACTACTTAAGTGAGAAATCAGGTGGTTTACCTTCTAGAAGGTCACTGAACAATTTGATGATTCAACTTCGCAAGAATTGCAACCACCCTGATCTCTTGGTGTCAGCCTTTGACGGTTCATATTCATATCCACCGCTCAATGAGATAATCGAACAGTGTGGAAAATTCCGGTTACTGGATCGACTGTTGGCTAGACTATTTGAACTCAAACACAAAGTTCTGATCTTCAGCCAGTGGACAAAGGTTTTGGACATTATGGATTATTATTTCAGCGAGAAAGGTTTTGAAGTTTGTAGAATTGATGGCAATGTGAAACTGGATGAGAGAAAAAGACAGATTGAGGAGTTCAACGATGAATCCAGCAAATGCAGAATCTTCCTTCTCAGTACGAGGGCTGGGGGGCTGGGGATTAATCTAACTGCTGCTGATACTTGTATACTTTATGATAGTGACTGGAACCCACAAATGGATTTGCAAGCCATGGATAGATGCCACAGAATTGGTCAAACAAAGCCTGTCCATGTGTACAGGCTTGTGACAGCTCAATCTGTGGAGGGTCGCATTCTGAAAAGAGCTTTTAGCAAGTTGAAGCTTGAGCAAGTTGTGATTGAGAAGGGTCAGTTTCATCAAGAACGAATGAAGCCTAATAATCTTGATTCGTTACAGGAAGATGATATACTAGCACTGTTCCGAGATGAGGAAACTGCAGAAGAGAAAATGATTCAGGTAGAGATTAACGAGCAAGACTTGGACAGAGTCTTGGATCGCAGTGATTTGATAGGCAAAAACTCAGGCCGCGGCAGCATTCCTCTCAAAGGGCCTGGTTGGGAAGTGATCATACCAACGGCAAATGCAAGCGTTCTTTCAACATTAAACAACTAA 1800 0.4094 MLTRSMENEKADEVNISEEERVDKEQKELIPLLTGGQLKSYQMKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLHGPYLIIAPLSTLSNWMNEISRFAPLLTAIIYHGDRKQRDELRRKHMPKLIGQKFPIIITSYEVALNDAKRYLKSYNWKYVVVDEGHRLKNSSCKLVNALKLLNMENKLLLTGTPLQNNLAELWSLLNFILPDIFSSHEEFQSWFDLSGKCGSEATKEEMEEKRRSHVVSKLHAILRPFLLRRMKADVECMLPRKKEIILYANLTDHQKDIEQHLVNKTLENYLSEKSGGLPSRRSLNNLMIQLRKNCNHPDLLVSAFDGSYSYPPLNEIIEQCGKFRLLDRLLARLFELKHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGNVKLDERKRQIEEFNDESSKCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLVTAQSVEGRILKRAFSKLKLEQVVIEKGQFHQERMKPNNLDSLQEDDILALFRDEETAEEKMIQVEINEQDLDRVLDRSDLIGKNSGRGSIPLKGPGWEVIIPTANASVLSTLNN* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00383 599 MobiDBLite consensus disorder prediction 1 20 - -
Pte4g00383 599 Gene3D - 39 269 IPR038718 -
Pte4g00383 599 Gene3D - 274 571 IPR027417 -
Pte4g00383 599 CDD SF2_C_SNF 350 485 - -
Pte4g00383 599 Coils Coil 8 28 - -
Pte4g00383 599 Pfam Helicase conserved C-terminal domain 364 474 IPR001650 -
Pte4g00383 599 FunFam Chromatin complex subunit A 106 278 505 - -
Pte4g00383 599 FunFam ATP-dependent DNA helicase DDM1 32 277 - -
Pte4g00383 599 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 218 IPR014001 -
Pte4g00383 599 Pfam SNF2-related domain 41 338 IPR000330 GO:0005524|GO:0140658
Pte4g00383 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 268 IPR027417 -
Pte4g00383 599 SMART helicmild6 390 474 IPR001650 -
Pte4g00383 599 SMART ultradead3 34 229 IPR014001 -
Pte4g00383 599 PANTHER SNF2/RAD54 HELICASE FAMILY 9 546 - -
Pte4g00383 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 557 IPR027417 -
Pte4g00383 599 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 520 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00383 Pte-Chr4 25031609 25035179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00383 24 495 RAD5 or RAD16-like Gene Family AT3G16600 25.606 3.17e-34 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pte4g00383 SNF2_N 2.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00383 K19001 - qsu:111991807 958.362