Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00377 ATGTCAGAATACGAAGAGAGATATGACGGCAATGGAGACCAGGCAGACAACTACGCCGGTGGCTATTCTCCTCAACCTCACAGCGGCAACGAGCGAAGCGGTTCCAAATCTCATCATGGTTCTCCGGACTACGAAAGACACTCTTCCAGGAGTAGGGAAAAGGAACGAGAAAAAGGACGTGATAAGGAGAAGGATCGAGGCAGAGATCATGGTAAGCACCGGGATAGAGACAGGCATAGAGACAGAAGTAGGGATAAAGAACGAGTAAGAGACGGGGACAGAGACCATGACAGGGATCGACATCGCCACCAAAAGGAGAGGCACAGAGATTGCAGTGAGAGAAGGGAGCGTGGCAGAGATAGAGATGATGAAGATGATGACCGCAGCCTGGATTATGACAGACGCAGAGATTATGATAGAGATAGAGAGAAAAGACACAGACGCAGGTCCCATACACGCTCCCCTTCTCCTTCAAGAAGTAGATCGCGCAGATCAAGATCAAGATCAAAAAGCAAGAGGATTAGCGGTTTCGATATGGCTCCTCCTGCTGCTGCATTGCTGCCTGGTGCAACTACTACCACAGTTCCGGGGACAAATCCTGTGCTACCTGGATTGTTTCCAAATCTTTTTCCTTTGCCAGGTGGTCAGCAATTCAGCACCATCCCTGTTATGCCAGTGCAGGCAATGACTCAACAGGCTACTCGGCATGCTAGACGGGTTTATGTTGGAGGTCTTCCGCCTACAGCAAATGAACAGTCCGTTGCAACATTTTTCAGTCATGTTATGTCCACGATTGGAGGAAACACTGCTGGACCCGGTGATGCTGTTGTTAATGTTTACATCAACCATGAAAAGAAGTTTGCATTTGTGGAGATGAGATCTGTTGAAGAAGCTAGCAATGCAATGGCCCTTGATGGAATTATTTTTGAGGGTGCTCCTGTTAAGGTGAGGAGACCGAGTGACTATAACCCATCCCTAGCTGCAACTCTTGGTCCCAGCCAACCCAATCCAAACCTGAACCTGCGTGCTGTGGGGTTGAACCCAGGTTCTGCTGGTGGACTCGAGGGTCCAGATCGGATATTTGTTGGCGGACTCCCTTATTACTTCACTGAACAGCAGGTCAGAGAGTTGTTAGAAACTTTTGGTCCTCTTCGAGGTTTTGATCTGGTGAAGGACAGAGAAACAGGAAACTCCAAGGGATATGCATTTTGTGTATACCAAGATCTTGCAGTAACGGATATTGCATGTGCTGCTCTCAACGGAATAAAAATGGGGGACAAAACCCTTACAGTTAGACGAGCTAATCAAGGAGCTAGCCAGCTGAAACCAGAACATGAGAACATATTGATGCATGCGCAGCAGCAGATTGCTCTGCAGAAGCTTATGCTTCAACCGACTCCAGCACCTACGAAGGTTGTAAGTTTAACTCAAGCTGTTAGTCCAGATGAGCTTAAAGATGACGAAGTCTATGAAGAAATTGTGGACGATATGAGAACAGAGTGTGGGAAATTTGGTACTTTGGTGAATGTGGTAATCCCTCGTCCAAAACCTGATGGAGAGCCATCACCTGGAGTTGGGAAGGTGTTTTTGGAGTATGCTGATATAGATAGTGCCGTAAAAGCTCGTACAGGTCTGAATGGAAGAAAATTTGATGGGAGAGTAGTGGTGGCCGTCTTCTATCCAGAGAGTAAATTTACTGAAGGGGATTATGAAGGCTAG 1719 0.4724 MSEYEERYDGNGDQADNYAGGYSPQPHSGNERSGSKSHHGSPDYERHSSRSREKEREKGRDKEKDRGRDHGKHRDRDRHRDRSRDKERVRDGDRDHDRDRHRHQKERHRDCSERRERGRDRDDEDDDRSLDYDRRRDYDRDREKRHRRRSHTRSPSPSRSRSRRSRSRSKSKRISGFDMAPPAAALLPGATTTTVPGTNPVLPGLFPNLFPLPGGQQFSTIPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMSTIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLRAVGLNPGSAGGLEGPDRIFVGGLPYYFTEQQVRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGASQLKPEHENILMHAQQQIALQKLMLQPTPAPTKVVSLTQAVSPDELKDDEVYEEIVDDMRTECGKFGTLVNVVIPRPKPDGEPSPGVGKVFLEYADIDSAVKARTGLNGRKFDGRVVVAVFYPESKFTEGDYEG* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00377 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 468 562 IPR000504 GO:0003723
Pte4g00377 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 238 321 IPR000504 GO:0003723
Pte4g00377 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 360 429 IPR000504 GO:0003723
Pte4g00377 572 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 495 555 IPR000504 GO:0003723
Pte4g00377 572 Gene3D - 349 451 IPR012677 -
Pte4g00377 572 SUPERFAMILY RNA-binding domain, RBD 238 323 IPR035979 GO:0003676
Pte4g00377 572 CDD RRM3_U2AF65 470 558 - -
Pte4g00377 572 FunFam U2 snRNP auxiliary factor large subunit 335 448 - -
Pte4g00377 572 Gene3D - 466 571 IPR012677 -
Pte4g00377 572 SUPERFAMILY RNA-binding domain, RBD 467 564 IPR035979 GO:0003676
Pte4g00377 572 Gene3D - 233 334 IPR012677 -
Pte4g00377 572 PANTHER RNA-BINDING PROTEIN 33 570 - -
Pte4g00377 572 FunFam U2 snRNP auxiliary factor large subunit 466 571 - -
Pte4g00377 572 CDD RRM1_U2AF65 237 319 - -
Pte4g00377 572 FunFam U2 snRNP auxiliary factor large subunit 233 334 - -
Pte4g00377 572 SMART rrm1_1 476 558 IPR000504 GO:0003723
Pte4g00377 572 SMART rrm1_1 359 432 IPR000504 GO:0003723
Pte4g00377 572 SMART rrm1_1 239 317 IPR000504 GO:0003723
Pte4g00377 572 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 55 570 IPR006529 GO:0003723|GO:0005634|GO:0006397
Pte4g00377 572 SUPERFAMILY RNA-binding domain, RBD 355 439 IPR035979 GO:0003676
Pte4g00377 572 CDD RRM2_U2AF65 358 434 - -
Pte4g00377 572 MobiDBLite consensus disorder prediction 1 183 - -
Pte4g00377 572 MobiDBLite consensus disorder prediction 145 170 - -
Pte4g00377 572 MobiDBLite consensus disorder prediction 32 144 - -
Pte4g00377 572 SMART rrm2_1 239 317 IPR003954 GO:0003676
Pte4g00377 572 SMART rrm2_1 472 558 IPR003954 GO:0003676
Pte4g00377 572 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 358 436 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00377 Pte-Chr4 24982839 24988167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00377 356 551 Eukaryotic Initiation Factors Gene Family AT1G49760 26.396 3.87e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00377 K12837 - jre:108997544 708.753