Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00376 ATGAATGATCTAATGACAAAATCGTTCTTAAGTTATGTGGAACTCAAGAAACAGGCGCAGAAGGACTTTGAAGGAGAACTTGACTTGGAAGCTAGCCGACTAAACCTTGAAGAAGAACAGAACCTCTCTCTGTTCTTTGATGAAGTTAATGCAGTGAAAGCCGAAATGGAAGAGATCGTCATTCTCTTATCTGATCTTCAAGATCTGAATGAAGAGGCAAAATCAACACACAGTGCTAAAATCCTTCGTGGACTAAGGGACAGAATGGAATCAGACATGAGTGCTGTTCTTCGTAAAGCCAAGATTGTCAAGGCAAGGTTAGAAGGGCTTGACAGATCAAACATCAGCAACCGTAAAGAATCACAAGAATACAAAGAAGGAAGCACTGTGGACCGAACGAGGATGTCAGTGACGAATGGTTTGAGAGTCAAACTCAGAGACCTAATGAATGACTTTCAGTCCTCGAGGGAAAAGATTCTGCTCGATCACAAAGAAGACCTCAAGAGAAGGTGTTACACTGCTACAGGAGAAGTCCCAAGTGATGAGATGATAGACAAGATGGTTTCAGGGATAGTGCAAGTTCAATTGTTTGAAGGGAATACAGAGGCTGATATGAGAAACAAGGCCAGGCATGAGGCTGTGATGGACATCCAGAGAAGCTTGAATAAGCTTCACCAGGTATTTCTTGACATGGCTGTTCTGGTTGAGACTCAAGGAGTAAAGATGGACGACATAGAACTGAATGTAGCCAAAGCGGGTAGCTATGTAAGTGGTGGGACCAATAGTCTTTACTATGCAAATCAGATTAAGCAGAACAAGAAGAAATGGTTCTACTGGGTTTGGGCTGCGATGCTGATTATTCTGTTGGTATGCTTCATTTCGATAATAGCTTCTTGA 897 0.4225 MNDLMTKSFLSYVELKKQAQKDFEGELDLEASRLNLEEEQNLSLFFDEVNAVKAEMEEIVILLSDLQDLNEEAKSTHSAKILRGLRDRMESDMSAVLRKAKIVKARLEGLDRSNISNRKESQEYKEGSTVDRTRMSVTNGLRVKLRDLMNDFQSSREKILLDHKEDLKRRCYTATGEVPSDEMIDKMVSGIVQVQLFEGNTEADMRNKARHEAVMDIQRSLNKLHQVFLDMAVLVETQGVKMDDIELNVAKAGSYVSGGTNSLYYANQIKQNKKKWFYWVWAAMLIILLVCFISIIAS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00376 298 FunFam Syntaxin 132 199 297 - -
Pte4g00376 298 CDD SNARE_syntaxin1-like 208 263 - -
Pte4g00376 298 Pfam Syntaxin 45 239 IPR006011 GO:0016020
Pte4g00376 298 SUPERFAMILY t-snare proteins 41 259 IPR010989 GO:0016020|GO:0016192
Pte4g00376 298 PANTHER SYNTAXIN 53 291 IPR045242 -
Pte4g00376 298 Gene3D - 199 298 - -
Pte4g00376 298 Gene3D - 36 170 - -
Pte4g00376 298 Coils Coil 52 72 - -
Pte4g00376 298 CDD SynN 45 190 IPR006011 GO:0016020
Pte4g00376 298 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
Pte4g00376 298 SMART SynN_4 37 164 IPR006011 GO:0016020
Pte4g00376 298 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 39 170 - -
Pte4g00376 298 SMART tSNARE_6 199 266 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00376 Pte-Chr4 24959121 24960784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00376 1 298 SNARE and Associated Proteins AT2G18260 58.958 1.43e-122 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00376 K08486 - qsu:111998859 452.981