Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00373 ATGGAGAGGTCTCCACGATACAACAAAGGCTCCCGACTACAAAATGCTATGTTACCGATCAAGCAAAGGAGTGGATATGAACCATCCGATGCTGAAACAGACAATGAAGGAACCAAGCGTCGTGAACGAGACAGAAAGTACAGTGGAGTTTTACTGTTGGAAACCCCTAAAGCTTCAAGCCCCTTGAAAACTCAAAGGGGTCATTCATCTTCAAGGTTTGAATATGATGCAACATCTTCTAGCCAGCCCAGAAGAAATCAGCATAGTAAGTCGCCCTACAGGCTGCGAAGAGTAGACAACGAAGCTGTAGGGGATTCATATTTGACGATTTTGGATTCACATCGAAGTCCTAGTCCGATTAAGAAAGCAGCTGACAATGGAAGAGGTTTGTGTTCTCACAAAGCTCAGGGACAAGAGAGTATCTGGGATATGGATGAAGCTGTAAATATAACCAGGCATCAAAATCATAGAATTCAAATTCCTAGAGCTAATGGAATAAATAGAGCTAGTGAGAAATCAAAACATGTTAGGAGATCGGGGTCTGCTACAAGAAATAGAGGGAGGGAGAAGGATCAAACAAGTTTTTCTGGAAAAACTGGGGAGAGGTCTCTGTCAACAATTCCTAGTGGTACAGATGAATCACACAATAAAGATCTTTCAGTAGGAGAAATCAACGAACTCATTGCACAAGCAAAGCTTGCTAGAGGTCACGATCGAATTGGTGATGATGCAGTGTTAGATACTACAGATTCAATTGCACCTGGGGATATTTTCTTTTCTGCTAATTTTTTGACAAGACCAAAGAGTGAAATACCAACGCAAGATGGTATGGAAGGTCATTTTGGCCCTAAGGCAAAGATAGCCCCTAAGAATAATACAGCTTCTCGTGAACTAAGTAGAGAAAATGGTAAGAGCAAAGACAGTTTCCGTGGTGGTTCATATAATGCCAGTTCATCTAGGAGAAATACAGTTCCTACTGCCACAGTTAGCAGGAGTAGTTCTAAAACAAGATCGTCTGCTATGAGCAGGAGCAATTCTAAACCAGGCTTTGTGGTTGCTAAGGATAGTTATGCTAGTGACAAGTCAACTACAAGCCTATCGAAATTCACAGCTAATATGAGGAAAAGCCGATCAGACTCATGGTTTGGATGTATGAGGCAAGGATCTTGTACAAGATCCAAATCGCCTGAACAAGGAGAAATCGATGAATCTTTGATAATTCAGAAGACATATGTGGTTGAAAATCTCAGACAATTTTGGGCAGATAAGCATCAACCTACTTCACTGGATGGTTTCATTTGCCACAAGCAAGAAGCTCAAATTCTCAAGCAATTTGCTTCACAGGACCTATGTCCTCACATCTTGTTCAAAGGACCACCTGGGTCAGGCAAAAGAGCACTTGCTATGGCTCATTTAAGTGAAATATTTGGGGACTCAATTTGGAATTTATCCCATGATTTACGATATTTCCAGATTCAGGAAAGAAGGTCTGTACAAGTAGTTGTCCCAGTGACGTCCAGCTCTCATCATTTTGAGCTCAATGTAAATATGGATCAAAACTCGAAACATGCACTACTGGGGTTAGTTAAACAAATAAGCAAAGAATTTGGAGTTACCCCAGAAGTCAGCAACATCAATTTCAAATCCAATTATAAAGTTATAATTCTTTACGGGGTGGACAAGGCAACAGAGAATATGCAGCACTTAATAAAATGGATTATAGATCGGTATTCTGATGTCTGCAAACTTTTCCTTTGCTGTGAAGACGATGCAGGGTGTCTTGAGTCAGTGAAGAGTCGGTTCAAAGTGATTAAGGTTGATGCTCCCTTGACTCATGAGGTCGTGGAAGTTCTTCTTCAGATTGCAAGGAAAGAGGAAATTGAGCTATCCGCGAAATTTGCTTCCAAAATTGCTTCTAAATCAAAGCAGAACGTCAGGAAAGCAATCATGGCTCTTGAAGCATGCAAAGCACATAACTATCCATTAGCAGATGACCAACCTATTCCAGTTGGATGGGAGGAAACATTGATAGACATTGCTGAAGATATCCTAGTTGATCCATCACAGGCTCGGTTATTTTCTATGAGAGGAAAACTTCAAAAGCTGCTCGTGGATTTTGTCCATCCTAAATTGATTCTCCTGAAGCTTGTGGAACACTTCCTTAAAAGAATGGAGGGTACCTCAAAAAGAGAGCTTTATTATTGGCATGCTTATTATGAAAAGAGACTCCCAGCAGGAACAACTGCATTGCTGAAATTAGAAGAATTTGTTGCCAAGTTCATGAGCATTTACAAAAGGAGCTCTGGTACCCGGAAGTTTCAGTAG 2325 0.4086 MERSPRYNKGSRLQNAMLPIKQRSGYEPSDAETDNEGTKRRERDRKYSGVLLLETPKASSPLKTQRGHSSSRFEYDATSSSQPRRNQHSKSPYRLRRVDNEAVGDSYLTILDSHRSPSPIKKAADNGRGLCSHKAQGQESIWDMDEAVNITRHQNHRIQIPRANGINRASEKSKHVRRSGSATRNRGREKDQTSFSGKTGERSLSTIPSGTDESHNKDLSVGEINELIAQAKLARGHDRIGDDAVLDTTDSIAPGDIFFSANFLTRPKSEIPTQDGMEGHFGPKAKIAPKNNTASRELSRENGKSKDSFRGGSYNASSSRRNTVPTATVSRSSSKTRSSAMSRSNSKPGFVVAKDSYASDKSTTSLSKFTANMRKSRSDSWFGCMRQGSCTRSKSPEQGEIDESLIIQKTYVVENLRQFWADKHQPTSLDGFICHKQEAQILKQFASQDLCPHILFKGPPGSGKRALAMAHLSEIFGDSIWNLSHDLRYFQIQERRSVQVVVPVTSSSHHFELNVNMDQNSKHALLGLVKQISKEFGVTPEVSNINFKSNYKVIILYGVDKATENMQHLIKWIIDRYSDVCKLFLCCEDDAGCLESVKSRFKVIKVDAPLTHEVVEVLLQIARKEEIELSAKFASKIASKSKQNVRKAIMALEACKAHNYPLADDQPIPVGWEETLIDIAEDILVDPSQARLFSMRGKLQKLLVDFVHPKLILLKLVEHFLKRMEGTSKRELYYWHAYYEKRLPAGTTALLKLEEFVAKFMSIYKRSSGTRKFQ* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00373 774 SUPERFAMILY post-AAA+ oligomerization domain-like 671 765 IPR008921 GO:0003677|GO:0006260
Pte4g00373 774 Gene3D - 417 609 IPR027417 -
Pte4g00373 774 MobiDBLite consensus disorder prediction 197 215 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 168 196 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 1 98 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 165 218 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 269 347 - -
Pte4g00373 774 FunFam Replication factor C subunit 3 418 609 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 308 346 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 27 50 - -
Pte4g00373 774 Gene3D - 611 669 - -
Pte4g00373 774 Gene3D - 671 764 - -
Pte4g00373 774 MobiDBLite consensus disorder prediction 58 88 - -
Pte4g00373 774 FunFam replication factor C subunit 3 611 668 - -
Pte4g00373 774 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 420 753 - -
Pte4g00373 774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 440 656 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00373 Pte-Chr4 24921158 24924798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00373 419 765 Core DNA Replication Machinery Family AT5G27740 37.714 6.98e-79 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00373 K10756 - qsa:O6P43_033685 760.755