Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00349 ATGTTAAGCCCACCTGCCTTGTCAAATTACCAGAACAAGAATTCAGTGAACCAAGTAATGAACAGCATATTCTCTTACAACAGCAACATCTTGTTGGCTGCGATTATTTCTTTACTGTTAGTCATCTTGTTTGTGCTGATTCTTCACGTTTATGCTAAGTGGTTTCTAGCACATGCTCAAGCTCAGGCACGGGGTCGGCATCGACGGGCTTCGGTGACTGTCAGTCACGTTCTGGGCCCTGCCCAGTTCCAACATTTTCACACTAGCGATTTTGAAGATTCACCCTTGTCGAATTCGAATTCTGTGAGCAAAGGACTTGATGCCCAAACAATTGCTGCCATTCCTCAGTTCGTGTTTGATTCCAAGTTGAAAAAATTGCATGGGGTCCAAGTTGATGATGATGAGACCTGCAATACAAGTTTGGAATGTGTAGTTTGTTTGAGTGCTTTTGAAGATGGCGAGATGGGTCGGACATTACCAAAGTGTGGGCATGCTTTTCATGTTGATTGCATCTTCATGTGGTTGCATTCACATTCAAGTTGTCCAATTTGCAGAGCTCCTGTAATGGTGGGAGGCACTATTGAAAGTGAATCCCAATTGGGTTCAGTTCATGAGGATGATCCCTCTGCTTTAATAGAAATTGTCATGGATACTCCAAGTGCTGTGATTCATGAGCATAGAAATGAGACAAGTTTGAATGACAACAACATCGTAGACAATGATTCTGTTGAGGGAAATCCTTACTTTCTGCTAGGGTGTTGTAAAGTTTTCCCATCTTCCAATGTTAACGAATCAAATGCTTGA 804 0.4229 MLSPPALSNYQNKNSVNQVMNSIFSYNSNILLAAIISLLLVILFVLILHVYAKWFLAHAQAQARGRHRRASVTVSHVLGPAQFQHFHTSDFEDSPLSNSNSVSKGLDAQTIAAIPQFVFDSKLKKLHGVQVDDDETCNTSLECVVCLSAFEDGEMGRTLPKCGHAFHVDCIFMWLHSHSSCPICRAPVMVGGTIESESQLGSVHEDDPSALIEIVMDTPSAVIHEHRNETSLNDNNIVDNDSVEGNPYFLLGCCKVFPSSNVNESNA* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00349 267 CDD RING-H2_EL5-like 142 185 - -
Pte4g00349 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 190 IPR013083 -
Pte4g00349 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 199 - -
Pte4g00349 267 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Pte4g00349 267 SUPERFAMILY RING/U-box 142 190 - -
Pte4g00349 267 SMART FANCL_C_2 139 193 - -
Pte4g00349 267 SMART ring_2 143 184 IPR001841 -
Pte4g00349 267 Pfam Ring finger domain 142 185 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00349 Pte-Chr4 20773066 20774247 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00349 24 213 Rapid Response to Elicitors AT3G16720 36.548 3.98e-31 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00349 - - qsa:O6P43_014072 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00349 4 20773066 20774247 Pte4g00349 4 20773066 20774247 RCT