Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00342 ATGGGTTACATATGTGACTTTTGTGGGAATCAGAGGTCAATGGTTTACTGCCGGTCCGATGCTGCATGCTTATGTCTGTCATGTGATAGGACCGTTCACTCTGCTAATGCACTTTCTAGGCGACATTCTCGGACACTAGTGTGTGAAAGATGTAATTCACAACCTGCTTTTCTAAGGTGTTTAGAAGAGAGGGTTTCGCTTTGTCGAAACTGTGATTGGTTGGCTCATGGTAGTTCTGTGTCAACATCAAATCATAAAAGGCAAGCAATCAATTGCTTCTCTGGCTGCCCTTCTTCTTCAGAACTTTCTACCATTTGGTCTTTCGAGTCTGATTCTCAAGCTGCTGGTGATTCGACATGCGAGCAGGAAACGGGATTAATGAGCATTGATGAGAATTGTTCAACTGATATTACTAATGTAATGACCTCGGATAAGTCAAGTTCTTGGGTTGGTTTATCTTGGCTCCCTGAGTCCAGCTCAAGACCTCACATTCTGAACCGGCCTGCTGGACCTAGTGATCCATTTACCAAGTCACGTTGTATTCATGCAGTAGCTTCTGAGCCATGTGGAGATAATGACTTCTACAAGGATTTCAATATGGATGAAGTAGATCTGGATTTTGAAAACTATGAAGAACTTTTTGGCATGACCCTCAGTAATTCTGAAGATCTTTTTGAGAATGGTGGCATTGACAGCTTGTTTGAGACAAAGGATATGTCTGCTGCAGATTCAAGTTGCCAGAGTGCTGTTGCTGCTGAGGGGTCAACTGTTGGCGTTGCCAATCCAATACAACCTGCATGTAGTAATGCAGCATCAGCAGATTCCACGATGAGTGCTAAAACTGAGCCAATTCTTTGTTTCTCGACAAGGCATGGACATGCTAGCCTGTCTTTCTCCAGCATTGCTGTGGACAGCAGTGGAGGAGATTATCAAGATCTCCTAGGAGAGCCTCCTTGGGGTTCTCCTTGCCGTGAGAATTCTTTGCTCTCTGCTAACCGTTCAAATGCTGTCATGCGTTACAAGGAGAAGAAAAAGACACGCAAGTTTGATAAAAAAGTGAGGTATGCCTCTCGCAAAGCAAGGGCTGATGTAAGAAGGCGTGTGAAGGGCCGATTTATCAAAACTGGCGAGGCCTACGATTATGATCCTTTGACTCAGACCAGAAGCTACTGA 1173 0.4442 MGYICDFCGNQRSMVYCRSDAACLCLSCDRTVHSANALSRRHSRTLVCERCNSQPAFLRCLEERVSLCRNCDWLAHGSSVSTSNHKRQAINCFSGCPSSSELSTIWSFESDSQAAGDSTCEQETGLMSIDENCSTDITNVMTSDKSSSWVGLSWLPESSSRPHILNRPAGPSDPFTKSRCIHAVASEPCGDNDFYKDFNMDEVDLDFENYEELFGMTLSNSEDLFENGGIDSLFETKDMSAADSSCQSAVAAEGSTVGVANPIQPACSNAASADSTMSAKTEPILCFSTRHGHASLSFSSIAVDSSGGDYQDLLGEPPWGSPCRENSLLSANRSNAVMRYKEKKKTRKFDKKVRYASRKARADVRRRVKGRFIKTGEAYDYDPLTQTRSY* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00342 390 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515
Pte4g00342 390 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pte4g00342 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 378 - -
Pte4g00342 390 CDD Bbox1_BBX-like 47 90 - -
Pte4g00342 390 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Pte4g00342 390 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pte4g00342 390 SMART bboxneu5 48 90 IPR000315 GO:0008270
Pte4g00342 390 CDD Bbox1_BBX-like 4 47 - -
Pte4g00342 390 Pfam CCT motif 333 375 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00342 Pte-Chr4 19222626 19227490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00342 1 391 C2C2-CO-like Transcription Factor Family AT3G07650 56.691 7.94e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pte4g00342 CCT 1.7e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00342 - - jre:109000761 543.117