Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00341 ATGGGTCTCTATACTCTTCCAGGACCATATGAAGGAATGATGTGTGTAATAACAGTGAACGCCGACAACTTTGTATCCTTTTTCAAAAACATTTTCAGAACAATCCTTCATGTTTTCGGTATCAATCTGTGGCCATCAACTGAACAACCGCCATCTGAGGTGACTCAGATTCCAGCACCAGCAGAATCATTCAAAAGCGGGACACTATCAATTCGATATGATTCAGTTCCAAGTGGTGAAAGGCTAAACAATGACTGCACAGTATGCCTGAACAAATTTGAACCGGAGTCGGAAATTTACAGGTTATCTTGTGGTCATGTTTTTCACCATGAATGCTTGAAGCAGTGGGTGGATTATTGGAACATCAAATGCCCACTTTGCAGGACACCCTTGATGCCTGAAGAGGAATCAAAATGCTTTGGGGAGACAAATGAAGACTGA 441 0.4195 MGLYTLPGPYEGMMCVITVNADNFVSFFKNIFRTILHVFGINLWPSTEQPPSEVTQIPAPAESFKSGTLSIRYDSVPSGERLNNDCTVCLNKFEPESEIYRLSCGHVFHHECLKQWVDYWNIKCPLCRTPLMPEEESKCFGETNED* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00341 146 PANTHER - 1 136 IPR044249 -
Pte4g00341 146 SMART ring_2 86 127 IPR001841 -
Pte4g00341 146 CDD RING-H2_RHA1-like 83 131 - -
Pte4g00341 146 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Pte4g00341 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 133 IPR013083 -
Pte4g00341 146 Pfam Ring finger domain 84 128 IPR001841 -
Pte4g00341 146 SUPERFAMILY RING/U-box 85 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00341 Pte-Chr4 19018121 19018561 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00341 1 135 C3H Transcription Factor Family AT2G04240 44.156 1.28e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00341 K16285 - gmx:100305532 166.777