Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00289 ATGGGTACATCTTCCGGTTCTAATGTCAACCAGCAACCTTCAAAAATGCTTCCTCCAAGACAACAATCACGGGCTGGTGGACTACAAACATCCTTATCTCTAGTTCCCTCAGATGCTCGGCTTTCTCCTGAGGAACCTAGATCAAATTCTGATCATATGCATGAATCTCCAACTGAGAGTGCTAGTTCCAGAGAAACATGGCCTAATGCAGATGCTATCATAGCAAAGAAGATGGAGAATGGTAAAGAAGATAATGACTCCCCTGACCAATCAGTCATTTGGCGTGTTTCTAGTGCAGATAGAATAACACTTAGAGACATAGCAAGAGAACCAGTGGAGATTATTTCTGAAAAAATGCATCATTTACCTGAGGAGTTTCTAGATGAGCTCAAGAACAGGCTTCGAATTATTCTGGAAGGAGGGAGTCCTTCACAACATAAGGAGGAGTATTTTATCATGCAAAAGTTTGTTCAGAATAGAACCGATTTAACAGCTAAGACATTAATAAGAGCACATCGAGTACAACTTGAGATCCTTGTTGCAATTAACACTGGAATCCAGGGATTCTTACATCCTAGTATGAGTCTCTCACAAACCTGTCTTATTGAGATCTTCCTATACAAGCGTTGCAGAAACTTAGCTTGCCAAAACCAGCTCCCAGCAGATGATTGTATCTGTGAGATATGTAGCAACAGAAATGGATTCTGTAATCTCTGCATGTGCGTGATCTGTAACAAGTTTGACTTTGAAGTAAATACATGTCGTTGGATCGGCTGTGATCTTTGTTCTCATTGGACACACACAGATTGTGCTATCCGCGATCGGCTTATTTGTATGGGCCCTCCGGTGAAGAATGGTGGAGGACCAACTGAAATGGTTTTCAGGTGTCAAGCTTGCAATCGAACTTCAGAGTTGCTGGGCTGGGTTAAAGATGTTTTCCAGCATTGTGCACCAGTCTGGGATGGTGAAGCACTGATGAGAGAACTTGATTTTGTAAGTAGGATTTTTCATGGCAGTGAAGACCCATGGGGGAGGAAACTCTTTTGGAAGTGTGAAGAACTTAAAGATAAAATGAGAAGTGCATTAGTAGATCCAAAAACAGCCTGCAGAGCAATATTGGTGTTTTTCCAAGAGCTTGAAGTTGAATCTCCAAAAAGCCTTGAAAATGGAGAAGGTGGAAGGTTGATTGCTCCACAGGAGGCATGTAATAGAATTGCTGATGTGGTGCAAGAGGCTATACGAAAAATGGAAACGGTGGCTGAAGAGAAGTTGAGGCTGTTCAAAAAAGCACGTTTGGCTCTTGAAGCGTGTGATCGTGAACTAGAGGATAAAGCCAGGGAAGCCGCAGAACTCAAATTGGACAGGCAAAAGAAAAAAGCACAGATAGAAGAGTTGGAGAAAATTGTGAGACTCAAAACTGCAGAGGCTGATATGTTTCAGTTTAAAGCTAACGAGGCGAAACGAGAAGCAGAGAGGCTACAAAGGATTGCATTTGCCAAGCAAGATAAATCAGAAGAAGAATATGCTAGCAACTATCTTAAACAGCGTTTGAGTGAGGCAGAGGCAGAAAAGCAGTATCTGTTTGAGAAGATCAAATTACAGGAGAGTTCTCGGGCATCAGCATCTCAGAGTTGTAGTGGCAGTGCTGACCCCTCTCAGATTTTGATGTATTCCAAAATACATGATTTGATCTACAATGTTTCCTCCAAGACTGATAGCCAGCCAAACGACCGGAATCCTTTCAGGTCCAATCAATGA 1758 0.4221 MGTSSGSNVNQQPSKMLPPRQQSRAGGLQTSLSLVPSDARLSPEEPRSNSDHMHESPTESASSRETWPNADAIIAKKMENGKEDNDSPDQSVIWRVSSADRITLRDIAREPVEIISEKMHHLPEEFLDELKNRLRIILEGGSPSQHKEEYFIMQKFVQNRTDLTAKTLIRAHRVQLEILVAINTGIQGFLHPSMSLSQTCLIEIFLYKRCRNLACQNQLPADDCICEICSNRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDRLICMGPPVKNGGGPTEMVFRCQACNRTSELLGWVKDVFQHCAPVWDGEALMRELDFVSRIFHGSEDPWGRKLFWKCEELKDKMRSALVDPKTACRAILVFFQELEVESPKSLENGEGGRLIAPQEACNRIADVVQEAIRKMETVAEEKLRLFKKARLALEACDRELEDKAREAAELKLDRQKKKAQIEELEKIVRLKTAEADMFQFKANEAKREAERLQRIAFAKQDKSEEEYASNYLKQRLSEAEAEKQYLFEKIKLQESSRASASQSCSGSADPSQILMYSKIHDLIYNVSSKTDSQPNDRNPFRSNQ* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00289 585 SMART PHD_3 240 300 IPR001965 -
Pte4g00289 585 MobiDBLite consensus disorder prediction 1 37 - -
Pte4g00289 585 MobiDBLite consensus disorder prediction 1 68 - -
Pte4g00289 585 CDD PHD_OBE1_like 240 299 IPR047578 -
Pte4g00289 585 Pfam PHD - plant homeodomain finger protein 210 333 IPR032881 -
Pte4g00289 585 MobiDBLite consensus disorder prediction 44 59 - -
Pte4g00289 585 Pfam Coiled-coil region of Oberon 428 563 IPR032535 -
Pte4g00289 585 PIRSF UCP025218 1 573 - -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 118 140 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 247 267 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 175 190 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 502 524 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 463 483 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 201 222 IPR004082 -
Pte4g00289 585 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 320 339 IPR004082 -
Pte4g00289 585 Coils Coil 427 503 - -
Pte4g00289 585 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 33 568 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00289 Pte-Chr4 11586101 11589604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00289 210 312 PHD Gene Family AT5G57380 32.692 7.92e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00289 - - qsa:O6P43_020737 970.689