Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00274 ATGCAATCTGATAATGGTAAGTTGTTTGTTGGTGGGATATCTTGGGACACGAATGAAGATCGTCTGAAGGAGTACTTCAGTTCTTACGGGGAGGTTGTTGAGGCTGTAATTATGAAGGATAGGGCCACAGGTCGAGCACGAGGCTTTGGCTTTGTTGTTTTTGCACACCCAGGTGTTGCAGATATAGTCATAAAAGAGAAGCACAACATCGACGGAAGAATGGTTGAGGCAAAGAAGGCTGTTCCTAGGGATGACCATAATGTACTTAGCAGAAACAGTGGCAGTATCATCCAAGGTTCTCCTAGTCGTACAAGAAAGATATTTGTTGGAGGTTTAGCATCTTCTGTTACAGAGAGTGATTTCAAGAATTATTTTGATCAGTTTGGGACAATTACTGATGTTGTGGTGATGTATGATCATAACACACAGAGACCTAGAGGATTTGGGTTTATAACTTATGATTCTGAGGAAGCAGTGGATAAGGTTCTATACAAGACTTTTCATGAACTGAATGGGAAAATGGTTGAGGTCAAGCGCGCAGTTCCTAAAGAGTCATCACCAGGACCAGGCCGCAGCTCACTTGGTGGATATAACTATGGTCTGAGTAGGGTAAACAGCTTCCTAAATGGATACATGCAGGGATATAGTCCTAGTAACGTTGGAGGCTATGGTCTTAGAATGGATAGTAGATTTAATCTAGATACAGGTGTTCGAAGTGGATTTCCTCCTTTTGGTTCTGGTTATGGAATGGGTATGAATTTTGATCCTCGTTTAAATCCTGGTTCTGGAGCAACCACAAATTATAATAGCAATCTTAGCTATGGAAGAGGGCTGAACCCTTACTTTATTGGCAATTCAAACAGGTTTGGTAATCCTATGGGTTATGATGGTAATAATGGAGGGAACAGCTCTTTCTTTAGCTCAGTGACTCGAAATTTGTGGGGAAATGGAGGTCTTAGTTATGGAACAGGTTCTGCAAGTTCAAACTCATACATGGGACTGGGGAGTGGTAATGTTGGTGGAAATGCCTATGGTAATAATGGATTCAACTGGGGTACTGCAGCAAATGCTGGTCAAGATGTAGGAAACAATGTCTCCCAAAATAGTGGGAATCTTGGGTATGGAGGTGGTGGTTTGGTAACAGGAGCATATGGCAGAAGTAGTGGTATAAGTAATGCTCCAGCACCATCATACTCTTCATCAAATGGTGGTTTTGATGGGGCCTTTTCTGACATATACAGTTCCAGTTTGGTTTACAATGACCCGACTTGGAGGTCCTCAAATTCTGAGCGAGATGGTTCCAACCCTTTTGGTTATGGGCTTGGTAGTGGTGCAGGAGATGTTTCTGCAAAGAACTCTACTGGTTATGTCGGCGGTTATGGTGTCCAATAG 1392 0.426 MQSDNGKLFVGGISWDTNEDRLKEYFSSYGEVVEAVIMKDRATGRARGFGFVVFAHPGVADIVIKEKHNIDGRMVEAKKAVPRDDHNVLSRNSGSIIQGSPSRTRKIFVGGLASSVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYKTFHELNGKMVEVKRAVPKESSPGPGRSSLGGYNYGLSRVNSFLNGYMQGYSPSNVGGYGLRMDSRFNLDTGVRSGFPPFGSGYGMGMNFDPRLNPGSGATTNYNSNLSYGRGLNPYFIGNSNRFGNPMGYDGNNGGNSSFFSSVTRNLWGNGGLSYGTGSASSNSYMGLGSGNVGGNAYGNNGFNWGTAANAGQDVGNNVSQNSGNLGYGGGGLVTGAYGRSSGISNAPAPSYSSSNGGFDGAFSDIYSSSLVYNDPTWRSSNSERDGSNPFGYGLGSGAGDVSAKNSTGYVGGYGVQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00274 463 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pte4g00274 463 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte4g00274 463 SMART rrm1_1 106 178 IPR000504 GO:0003723
Pte4g00274 463 SUPERFAMILY RNA-binding domain, RBD 3 97 IPR035979 GO:0003676
Pte4g00274 463 Gene3D - 102 189 IPR012677 -
Pte4g00274 463 SUPERFAMILY RNA-binding domain, RBD 98 202 IPR035979 GO:0003676
Pte4g00274 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 165 IPR000504 GO:0003723
Pte4g00274 463 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Pte4g00274 463 FunFam Heterogeneous nuclear ribonucleoprotein 1 102 189 - -
Pte4g00274 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte4g00274 463 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Pte4g00274 463 Gene3D - 4 88 IPR012677 -
Pte4g00274 463 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pte4g00274 463 CDD RRM2_Hrp1p 106 183 - -
Pte4g00274 463 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00274 Pte-Chr4 10719586 10724870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00274 5 180 Eukaryotic Initiation Factors Gene Family AT1G71770 26.111 1.08e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00274 K14411 - gmx:100795907 709.909