Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00180 ATGGATCCATCTGAATCTGATGCAAATGTGACGGAGGAGTCACTGCCACCACCACCTCCTGTTCCTCCGGATGTGGTGCCACTGAAGGCTGCTTCAGATGCTCCTCCTGAACCTGTCAAGAGGAAAACTTCACTGGTTCCAATGTCTAGACCAAGAATTGCATCTAACGGGCAGAAAATACAACTTTTGACTAATCACTTTAATGTCAATGTCACCAATACTGAAGGCCATTTTTTCCACTACAGTGTAGCACTTTTTTATGAGGACGGGCGGCGTGTAGAAGGTAAAGGTGTGGGGAGAAAGGTGATTGACAAGGTTCAAGCAACCTATAGCCATCAACTTGAAGGGAAAGATTTTGCATATGATGGAGAGAAAAGTTTGTTTACCATCGGTCCACTTCCACAAAACAAACTTCAATTTACTGTTGTGCTTGAGGATGTCAAATCAAGCAGGAACAATGGGAATACTAGTCCTGATGGAAATGGAAGTCCAAATGATGGTGATCGGAAGAGAATGCGGAGACCTTACAATGCTAAAACTTATAAAGTTGAGATAAGTTATGCTGCTAAGATTCCAATGCAGGCAATTGGACATGCTCTCCGTGGTCAGGAATCGGAGAATTCACAAGAGGCACTGAGAGTGCTTGATATAATTCTAAGGCAACATGCTTCAAAGCAGGGCTGCCTACTTGTAAAGCAATCATATTTTCATAATGATCCAAAAAGTTTTAGTGATGTTGGTGGTGGTGTTCTTGGCTGCCGAGGGTTCCACTCAAGTTTTAGAACTACACAGGGTGGCCTGTCACTGAATATCGATGTATCTACAACAATGATTATAAAGCCTGGGCCTGTTGTGGATTTCCTGATTGCTAACCAGAATGCTAGGGATCCTTATTCTCTTGACTGGGCTAGGGCCAAGCGAACCCTTAAGAATCTAAGAATTAAGACCTACCCATCTAACCAGGAGTTCAAGATAACTGGTCTAAGTGAAAGACCGTGCAAAGATCAAACTTTTACTTGGAAGCAAAGAGGTGTGAATGATGAAGGTGAAATTGAAGTGACTGTTTATGATTATTTTGTAAATCATCGAAAAATTGAGCTTCAATATTCTGGAGATTTGCCATGCATTAATGTGGGGAAGCCAAAGCGCCCAACTTTTTTCCCGATTGAGCTCTGTGATCTGGTTTCCTTGCAACGATATACAAAAGCTCTTTCTACTTTCCAAAGGGCAGCATTGGTAGAAAAGTCTAGGCAAAAGCCTCCAGAGAAGATGAGGGTTTTATCTGATGCTTTGAGGCTCAATAATTATGATTCTGAACCGATGCTCCACAAATGTGGAATAGGAATAAGCAACAACTTTACTCAAGTGGAGGGTCGTGTACTTTCAGCCCCAAAGTTGAAAGTTGGCAATGGAGAGGATCTTTTCCCTAGGAATGGGAGATGGAACTTTAACAACAAGAAACTAGTAAGGCCAACAAAGATATCAAGGTGGGCTGTTGTTAATTTTTCAGCACGCTGTGACGTTCGTGGACTAATTCGTGACCTTGTTAGAGTTGGAGAGATGAAGGGCATTCTTATGGAACAACCTTTTGATGTGTTTGAAGAAAGTCCTCAGTTGAGGCGTGCTCCACCAGTGGTTCGAGTGGAGAAGATGTTTGAAGAGATGCAGTCAAAGCTTCCAGGAGCTCCTGAGTTTCTTTTGTGTTTGCTTCCTGAAAGGAAAAATTGCGATATATATGGACCGTGGAAGAAAAAGAACCTTTCAGAATTCGGAGTTGTTACACAATGCATGTGTCCTTTAAAAGTGAATGATCAATACTTGACAAATCTTTCGTTAAAGATCAATGCCAAACTTGGTGGGTTGAACTCTTTGTTAGCTGTTGAGCACCAACCTGCTATTCCTGTGGTGTCAAAATCTCCAACCCTTATTCTTGGAATGGATGTTTCTCATGGTACTCCTGGTCATACTGATGTTCCCTCTATTTCAGCAGTTGTTAGTTCAAGGCAGTGGCCTTTGATTTCAAAGTATCGAGCATGTGTGCGTACACAATCTCCAAAGGTGGAGATGATAGATTCTCTGTTCAAACCTGTTTCTGAAAAAGATGATGAAGGAATAATGAGGGAGCTACTGATAGATTTTTATACAAGTTCTGGCAAAAGGAAACCTGATAATATCATCATATTCAGGGATGGAGTAAGTGAGTCGCAGTTTAACCAAGTTCTGAATGTTGAGCTCCAACAAATGATTGAGGCATGCAAATTCTTGGATGAGAACTGGTCCCCAAGGTTTGTGGTAATTGTTGCCCAAAAAAATCACCACACGAAATTTTTCCAAAATGGATCCCCTGAAAATGTTCCTCCAGGAACCATCATCGATAGCAAAATCTGCCATCCCCGAAACTATGATTTTTATCTCTGTGCCCATGCTGGAATGATAGGAACAAGTAGGCCTACTCATTATCATGTGCTGCTAGATCAGGTCGGTTTCTCACCTGATGATCTTCAGCAACTAGTGCATTCCCTGTCCTATGTGTACCAGAGAAGCACCACTGCCATTTCAGTTGTTGCCCCTATATGCTATGCTCACTTGGCTGCAACTCAGGTGGCGACCTTCATGAAGTTTGAGGACAAAACTGAGACTTCATCCAGTCAAGGCGGTGTCACGCCTGCTGGGACTCCAGTTGTCCCGCAGTTGCCTAAGCTGGAGGAGAAAGTCTGTAATTCCATGTTCTTTTGTTGA 2739 0.425 MDPSESDANVTEESLPPPPPVPPDVVPLKAASDAPPEPVKRKTSLVPMSRPRIASNGQKIQLLTNHFNVNVTNTEGHFFHYSVALFYEDGRRVEGKGVGRKVIDKVQATYSHQLEGKDFAYDGEKSLFTIGPLPQNKLQFTVVLEDVKSSRNNGNTSPDGNGSPNDGDRKRMRRPYNAKTYKVEISYAAKIPMQAIGHALRGQESENSQEALRVLDIILRQHASKQGCLLVKQSYFHNDPKSFSDVGGGVLGCRGFHSSFRTTQGGLSLNIDVSTTMIIKPGPVVDFLIANQNARDPYSLDWARAKRTLKNLRIKTYPSNQEFKITGLSERPCKDQTFTWKQRGVNDEGEIEVTVYDYFVNHRKIELQYSGDLPCINVGKPKRPTFFPIELCDLVSLQRYTKALSTFQRAALVEKSRQKPPEKMRVLSDALRLNNYDSEPMLHKCGIGISNNFTQVEGRVLSAPKLKVGNGEDLFPRNGRWNFNNKKLVRPTKISRWAVVNFSARCDVRGLIRDLVRVGEMKGILMEQPFDVFEESPQLRRAPPVVRVEKMFEEMQSKLPGAPEFLLCLLPERKNCDIYGPWKKKNLSEFGVVTQCMCPLKVNDQYLTNLSLKINAKLGGLNSLLAVEHQPAIPVVSKSPTLILGMDVSHGTPGHTDVPSISAVVSSRQWPLISKYRACVRTQSPKVEMIDSLFKPVSEKDDEGIMRELLIDFYTSSGKRKPDNIIIFRDGVSESQFNQVLNVELQQMIEACKFLDENWSPRFVVIVAQKNHHTKFFQNGSPENVPPGTIIDSKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDQVGFSPDDLQQLVHSLSYVYQRSTTAISVVAPICYAHLAATQVATFMKFEDKTETSSSQGGVTPAGTPVVPQLPKLEEKVCNSMFFC* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00180 912 MobiDBLite consensus disorder prediction 1 47 - -
Pte4g00180 912 SUPERFAMILY Ribonuclease H-like 549 870 IPR012337 -
Pte4g00180 912 CDD Piwi_ago-like 440 872 IPR045246 -
Pte4g00180 912 Gene3D - 632 912 IPR036397 GO:0003676
Pte4g00180 912 ProSiteProfiles PAZ domain profile. 306 396 IPR003100 GO:0005515
Pte4g00180 912 ProSiteProfiles Piwi domain profile. 565 873 IPR003165 GO:0003676
Pte4g00180 912 Pfam N-terminal domain of argonaute 58 219 IPR032474 -
Pte4g00180 912 MobiDBLite consensus disorder prediction 149 163 - -
Pte4g00180 912 Pfam Argonaute linker 1 domain 231 280 IPR014811 -
Pte4g00180 912 SMART DUF1785_2 229 281 IPR014811 -
Pte4g00180 912 MobiDBLite consensus disorder prediction 149 175 - -
Pte4g00180 912 FunFam Protein argonaute 7 276 400 - -
Pte4g00180 912 Pfam PAZ domain 285 412 IPR003100 GO:0005515
Pte4g00180 912 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 54 875 - -
Pte4g00180 912 SUPERFAMILY PAZ domain 276 437 IPR036085 GO:0005515
Pte4g00180 912 Gene3D paz domain 275 400 - -
Pte4g00180 912 SMART Piwi_a_2 565 873 IPR003165 GO:0003676
Pte4g00180 912 FunFam Protein argonaute 3 633 912 - -
Pte4g00180 912 Pfam Piwi domain 566 873 IPR003165 GO:0003676
Pte4g00180 912 Gene3D - 460 626 - -
Pte4g00180 912 CDD PAZ_argonaute_like 281 395 - -
Pte4g00180 912 Pfam Argonaute linker 2 domain 422 467 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00180 Pte-Chr4 4143963 4150822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00180 39 913 Eukaryotic Initiation Factors Gene Family AT5G43810 35.016 2.56e-164 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00180 K11593 - qsu:111991924 1499.57