Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00173 ATGGGAAATTGTGTTGGGAAATCTGCCAAGTGTGCTCATGCTACTACCGCCAGTATCTTTGCTGATGAGGGTTCAAAAGTTCATGTCAAGGAAAAAGAGAATGCAACTTCTATTGACCGACATGGAAGAAGTGCGGGAAATGGCAAGCTTGCGGCACCTGCACCGGCACCAGCACCGGCACCAGCAACTCTTAAATCATTCAGCTTCAATGATCTAAGGAATGCCACTAGGAATTTCCGGTCAGACAGTTTGATTGGAGAGGGAGGATTTGGTTGGGTTTTCAAAGGATGGATTGATGAGATCACATATGCTCCCACCAAACCAGGAAGTGGGATGGTAGTGGCTGTTAAGAAGCTCAAGCAAGAAAGCTTTCAAGGACATAAAGAATGGCTTGCAGAAGTGAACTATCTAGGCCAGTTTCATCATGAAAATCTGGTGAAACTCATTGGTTACTGCTCTGAGTCTGAAAATAGGCTTCTTGTGTATGAGTTTATGCAGAAAGGAAGCTTGGAGAATCATTTGTTCAGAAAAGGAGTTCAACCTATCTCCTGGGCTACAAGGATGAATATTGCCATCGACGTCGCAAGAGCATTAACATTCTTGCACAGCTTTGATGCAAATGTTATATACCGTGATTTGAAGGCTTCTAATATCCTACTTGATTCAGATTTCAATGGCAAACTTTCAGACTTTGGCTTAGCAAGGGATGGACCTACTGGAGATAACACTCATGTATCCACCCGAATTATCGGAACCCGAGGTTATGCTGCTCCTGAGTATGTAGCAACAGGCCACTTGACCCCCAAGAGTGATGTTTACAGTTTTGGAGTTGTCCTTTTAGAGTTGCTAACAGGAAAGAGGGCAATGGAAGTTGAAAGAGGTAGCTATGTTGAAGAAACCTTGGTGGATTGGGCAAAACCCTTTTTGAGAGAGAGCAGACGAGTGTTAAGAATAATGGACACAAGGTTGGGAGGTCAATACTCGAAGAAAAGTGCTCAAGCTGCAGCCGAACTTGCACTGCAATGTTTGAGTGTGGATCCCAAGAACCGACCATTTATGGTGGATGCTTTGACCACATTAGAAAAGCTCCATACATCAAATACAACACCAAGGAGACCATCCACAAACTCAGGTTTAGACCATTACCGGGTCAAAGATTTAAGGAAGTCTCCAAAGCCTGTGAGATAA 1188 0.4386 MGNCVGKSAKCAHATTASIFADEGSKVHVKEKENATSIDRHGRSAGNGKLAAPAPAPAPAPATLKSFSFNDLRNATRNFRSDSLIGEGGFGWVFKGWIDEITYAPTKPGSGMVVAVKKLKQESFQGHKEWLAEVNYLGQFHHENLVKLIGYCSESENRLLVYEFMQKGSLENHLFRKGVQPISWATRMNIAIDVARALTFLHSFDANVIYRDLKASNILLDSDFNGKLSDFGLARDGPTGDNTHVSTRIIGTRGYAAPEYVATGHLTPKSDVYSFGVVLLELLTGKRAMEVERGSYVEETLVDWAKPFLRESRRVLRIMDTRLGGQYSKKSAQAAAELALQCLSVDPKNRPFMVDALTTLEKLHTSNTTPRRPSTNSGLDHYRVKDLRKSPKPVR* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00173 395 Gene3D Phosphorylase Kinase; domain 1 58 164 - -
Pte4g00173 395 MobiDBLite consensus disorder prediction 364 395 - -
Pte4g00173 395 MobiDBLite consensus disorder prediction 378 395 - -
Pte4g00173 395 FunFam PTI1-like tyrosine-protein kinase 3 165 373 - -
Pte4g00173 395 ProSiteProfiles Protein kinase domain profile. 79 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00173 395 FunFam Serine/threonine-protein kinase BIK1 57 164 - -
Pte4g00173 395 CDD STKc_IRAK 85 363 - -
Pte4g00173 395 SMART serkin_6 79 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00173 395 Pfam Protein kinase domain 81 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00173 395 Gene3D Transferase(Phosphotransferase) domain 1 165 381 - -
Pte4g00173 395 MobiDBLite consensus disorder prediction 34 59 - -
Pte4g00173 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Pte4g00173 395 SUPERFAMILY Protein kinase-like (PK-like) 64 374 IPR011009 -
Pte4g00173 395 PANTHER OS01G0588500 PROTEIN-RELATED 61 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00173 Pte-Chr4 3989861 3993616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00173 65 382 Glycoside Hydrolase AT3G07070 47.975 1.84e-97 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte4g00173 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00173 - - twl:120002910 544.658