Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00164 ATGGACCAGAATGAAATAGTCAAATTCTTGACGAGAACCATCGATAGTTTCGTTCAAGATCAGTTGATAAACAAAGAACAAAGAATCCGACACAAAGAGCAATGCGCAGAGAGATTAGCAGCTGAAGATGGAGCCAGTGGCAAGGACTCAGAGGTTCAATACTCGGATCAGGCAGTGTTGGCAAATTTGGATTGGGGTATTGAAGCACTTGAAGAAGCTATCAATACCTACAATGAGGAAACAAAGCTTGCTAGATTAGAACATGCAGAAAAAATGTTGCAAGTGTGTGCCATGTTAAACTCCAAGCAGAAAACTGCAGGAGTGCCTAACTTCTACCTTTCAGCTTGGGCTCACCTCAATCTTTCATACCTGTGGAAATTGCGGGACAACATTGACAATTCCGTCCTACATATCCTTGAGATGTTTTCCGTTGACCCTTTTTTCTCAAGAATAGACTTTGCTCCCGAGTTGTGGAAAATTCTGTTTCTTCCACACATGAACTCCATCTTTGGATGGTATTCACAGGAGAGGCAAAGGCTTGTGGTGGAGGTCATCCCCGACTCATCAGATTTGTCCTTTACGGCTGATTTAGATCAATTCTTCAACGAGTCTTTGGTGTTTACCATGAGACCAGATCAATTAGAGAAACTGCAAAAGCTGGAGCAGCTTTATGGAGAGACATTGGATGAGAATACTCGCCTCTATGCTAAGTACTATAAGGAGTGCATGCAAACAGATTCAACAGTCTCAGCCAGGAAGGTGATTCCAATGTTGCCAATTGCTGAGCCGCCCATGACACCTTTGCATGAAGTAAGCCGATCAATTCCTGATTATGTAAAATTTGGTCCTATTTTGCCCAAGAACGCTGGATTTTCTCCAATCTTAAGATCTATTGAAGCTGCAAAAGAAGAAAGCAGAATGAATGCATCTCCCAGTAGCTCATTGCAACCAAGTCAGCCCGATAGATTAAATGCAGAGCAACACGAGGTTCAGGAAGATGAAGATGAGTCAGATCGTGAACCTGATGATTCACATGTGGTTTCAAAAGTAAACACTCAAATGCAAACATCAGTTGCAATTAAGATGAATGTTTACAAGGAAACTGATCCGAGAGGACATTCAAAGAAAGTTAAGAACCAAGTTTACTCTCCAACGATGTCCAAGCCAATCGACTCCCCCAAAAACTCAAAGATTTCGTCTCCAAATCCAAAACAGCATGGTCGAAAAGAAACTGTTTCACTAATGCGACTGTTGTCTACCCGTGTCTCTGATTCAATGAATTCCACCTCTTTGCCTTCATCTCCACAATTGAGTAATGATCACAGTCAAAGCATCAGCTCACCAGACTCCGATAATGAAGAGGTGAATAGTCAAAGGAAAAGCTACATATCATCAAAGAAAGATAGTCCTGCATATGACAGTGATGGGTGTCAGAGCAGTTCACCGTATTCATCGTCAGATAAGAGGACAGCTCGATCGAGACCACCTAAGGATTTTGTTTGCCCTATAACAGGCCATTTGTTTTCTGATCCTGTAACCCTTGAAACAGGTCAAACGTATGAAAGAAAAGCTATTCATGAATGGCTAAAGAGAGGAAATACAACATGTCCCATCACACGACAACCTCTTTCTGCAACTGAACTACCCCAAACAAACTATGTTCTCAAAAGGTTGATAACATCTTGGAAAGAACAGTATCCGGATATAGCTCAGGAATATACATATTCTGAAACACCAAAACATTCATTTAGTTCCCCTTCCTCAAAGGAATCTCTCTTCGCATCCCCAAGCAGGACTGTTGGTTTAGCGAATCATAAGAACGTCGATGACCGTATCACACAAAGAAGCAAAAGGTTCGGTGGCCCAGCAGTGTCGATGTCGCCGACAAGTGTTATATCTCAAGCTGCAATGGAAGCTATAATAAATAATCTTAAACCTCACGTTTCGTGTCTTTGTACGTCAGAAAGCTTACATGATTGTGAAGCAGCTGTATTGGCAATAGCGAGATTGTGGAAGGACTCTGAGGCTGATCCAGGAGTTTACTCTTGTTTGTCAAAACCAACTATTATTAACGGCTTTGTGGAAATACTTGCAGCTTCTCTGAATAGAGAAGTTCTAAGAACAACTATTTGCATTCTTTCGCATCTGATTTTTGCTGATGAACGTGTTCGAGAAACACTTACCAGTGTAGATTCTGACATTGAGTGCTTAGCTGCTTTGCTTAAGAATGGCCTAACTGAGGCTGCTGTTCTTATTTATCAATTGAAGCCTGTGTTTGTTCAGCTTTCAGCTCATGATCTTATACCATCTCTTGTACAAATGATCTCAAACATGAAGGAAGAGTTGGGAGACCAGCAGTTAGTTATGGATCCCAAGGATGCTGCAATAGGACTGCTAGAGCAAATTTTGTTGGGAGGGGACGAAAATAATAGATCTCTCAATGCTATAACTGTTGTTTCAGAAAACGGAATACCAGCTTTGGTCAAGTGTTTGAGAAGTACTGAAGGAAGAGTGTCTGTGATTTCCATTCTTCTGTGCTGTATGCAAGCTGAAAAATGTTGCAGGAGTTTAATCGCTGAAAGAATTGATTTAACCCCGGTTCTTGAATCATTTCACGCTGGAAATGATAGTGTCAGAGGCATCTGTATCGATTTTCTCTCAGAACTGGTTCAATTGAACAGGAGGACATTCTGCAATAAGCTCTTACAGAAAATCAAGGATGAAGGTGCTTTCAGTACCATGCATACCTTTCTTGTATACCTCCAAATGGCTCCAATGGATCATCAACTTGCCACTGCAACTCTACTTCTTCAGCTAGATCTCCTCGTTGATCCACGAAAAATGAGCATGTACAGGGAAGAGGCTGTAGAGACACTGATAGAAGCACTTCGACAGAAAGACTTCTCTAACTATCAGATGAAGGCTTTAGACTCGTTGGTTTTGTTAACTGGAAGGCTTACTACCTCAGGAAAACCATGTACTGAGGCTTGGTTACTAAAGATTGCAGGTGTGAGTCAACCTTATGATGCATTAATGAAGACTGAACGGATTAGGCTATCTGGCAATGAGTTTCTGGAGACAGTGGAGGAGGACGAAAAAGCAATGCACTCTTGGCAGAAAAGACTAGCATCTGTGCTTTGCAATCATGAAAAGGGCGCTATTTTCAAAGCTTTGGAGGAATGCTTTCGGAGCAACTCACTAGAGATAGCAAAATCATCCGTTATTGTCGCTACATGGCTAACACACATGCTTTTCACTCTTCCTGATACTGGTGTCAGAGATGTTGCCCGCAGTTCCTTGCTGGAGCAATTCATTAATGTCCTCCAATCCTCTAAAAACCAGCAAGAGAAGATTTTGGCTACCCTTGCATTGAAAAGCTTCGTCAGTTATGCCCCTGCAATGGAGGCCCTGGGGACTTATGCCAAAACCATATACAAAATCTTGAGGAAATTGAAGAGGAATACCTTTGTGGCGACTGAGATAATGAAAGCCTTGATGAATTTGCCGTCAGTTGATGCTACAGAGTTGTGGAATTATACTGAAGTAACTGAGTTGGATTCTTCCACCAATGGAGAAGTCCATGCTTTGCTTTACCTGAAAGGAAGAATTTTAAGTGGACACTCTGACGGAACAATAAAGATATGGGAAGCTGGGAGGAGAGTACCGAGGCTAATTCAAGAGTTTCATGAGCACACAAAGGCTGTCACTTGCTTCTACGTGCCGTCCTCGGGTGACAAATTATACAGTGGTTCCTTGGATAAAACCATACGGGTTTGGACAATGAGATACGAAGACATCAGATGCATTCAAGTTCATGATGTAAAAGAAGTAGTGTATGAGTTAACGGCAGATTCGAACATGGCTTGCTATGTAACACAAGGAACAGGAGTGAAGGTTTATTATTGGTCTGGAACTACAAAGCAAATAAACTTGAACAAATACGTGAAGTGTCTTGCCATGAGTGGGGATAACTTGTACTGTGGCTGCTCTGGTTACAGTATTCAGGAGGTTGATTTATCTAACCATACAATACTCCCTTTATTCTCTGGGACAAGAAAACTTTTGAGTAAACAGACAATATACACTCTTCAAATCCATGACGATGTCTTGTTTGCCGGGGGTTCTTCAGTAGACGCCATTGCAGGAAAGATATTCTCAATGTCCAGCAAGGCAATCATAGGAACATTCTCAACATCAGTGGATATCCACCATGTAGCCATCAACCATGATTTCATATTTACAGCCTCAAAATGTGGCATCATTGAAGTTTGGCTCAAAGAGAGGTTTACCAGAGTTGGATCCATCAAAACATCGACTAACGGTTATTGCAAAATTACATCCTTAACAACGGATCCAGATGCTGGAATGCTTTTTGCTGGCTTCTCTGATGGAAAAATCCAGGTTTGGGCTCTGGACTGA 4419 0.4173 MDQNEIVKFLTRTIDSFVQDQLINKEQRIRHKEQCAERLAAEDGASGKDSEVQYSDQAVLANLDWGIEALEEAINTYNEETKLARLEHAEKMLQVCAMLNSKQKTAGVPNFYLSAWAHLNLSYLWKLRDNIDNSVLHILEMFSVDPFFSRIDFAPELWKILFLPHMNSIFGWYSQERQRLVVEVIPDSSDLSFTADLDQFFNESLVFTMRPDQLEKLQKLEQLYGETLDENTRLYAKYYKECMQTDSTVSARKVIPMLPIAEPPMTPLHEVSRSIPDYVKFGPILPKNAGFSPILRSIEAAKEESRMNASPSSSLQPSQPDRLNAEQHEVQEDEDESDREPDDSHVVSKVNTQMQTSVAIKMNVYKETDPRGHSKKVKNQVYSPTMSKPIDSPKNSKISSPNPKQHGRKETVSLMRLLSTRVSDSMNSTSLPSSPQLSNDHSQSISSPDSDNEEVNSQRKSYISSKKDSPAYDSDGCQSSSPYSSSDKRTARSRPPKDFVCPITGHLFSDPVTLETGQTYERKAIHEWLKRGNTTCPITRQPLSATELPQTNYVLKRLITSWKEQYPDIAQEYTYSETPKHSFSSPSSKESLFASPSRTVGLANHKNVDDRITQRSKRFGGPAVSMSPTSVISQAAMEAIINNLKPHVSCLCTSESLHDCEAAVLAIARLWKDSEADPGVYSCLSKPTIINGFVEILAASLNREVLRTTICILSHLIFADERVRETLTSVDSDIECLAALLKNGLTEAAVLIYQLKPVFVQLSAHDLIPSLVQMISNMKEELGDQQLVMDPKDAAIGLLEQILLGGDENNRSLNAITVVSENGIPALVKCLRSTEGRVSVISILLCCMQAEKCCRSLIAERIDLTPVLESFHAGNDSVRGICIDFLSELVQLNRRTFCNKLLQKIKDEGAFSTMHTFLVYLQMAPMDHQLATATLLLQLDLLVDPRKMSMYREEAVETLIEALRQKDFSNYQMKALDSLVLLTGRLTTSGKPCTEAWLLKIAGVSQPYDALMKTERIRLSGNEFLETVEEDEKAMHSWQKRLASVLCNHEKGAIFKALEECFRSNSLEIAKSSVIVATWLTHMLFTLPDTGVRDVARSSLLEQFINVLQSSKNQQEKILATLALKSFVSYAPAMEALGTYAKTIYKILRKLKRNTFVATEIMKALMNLPSVDATELWNYTEVTELDSSTNGEVHALLYLKGRILSGHSDGTIKIWEAGRRVPRLIQEFHEHTKAVTCFYVPSSGDKLYSGSLDKTIRVWTMRYEDIRCIQVHDVKEVVYELTADSNMACYVTQGTGVKVYYWSGTTKQINLNKYVKCLAMSGDNLYCGCSGYSIQEVDLSNHTILPLFSGTRKLLSKQTIYTLQIHDDVLFAGGSSVDAIAGKIFSMSSKAIIGTFSTSVDIHHVAINHDFIFTASKCGIIEVWLKERFTRVGSIKTSTNGYCKITSLTTDPDAGMLFAGFSDGKIQVWALD* 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00164 1472 Coils Coil 60 87 - -
Pte4g00164 1472 SUPERFAMILY WD40 repeat-like 1201 1471 IPR036322 GO:0005515
Pte4g00164 1472 ProSiteProfiles Trp-Asp (WD) repeats profile. 1445 1472 IPR001680 GO:0005515
Pte4g00164 1472 MobiDBLite consensus disorder prediction 422 489 - -
Pte4g00164 1472 MobiDBLite consensus disorder prediction 302 410 - -
Pte4g00164 1472 MobiDBLite consensus disorder prediction 347 362 - -
Pte4g00164 1472 MobiDBLite consensus disorder prediction 422 500 - -
Pte4g00164 1472 ProSiteProfiles U-box domain profile. 494 569 IPR003613 GO:0004842|GO:0016567
Pte4g00164 1472 Pfam U-box domain 496 565 IPR003613 GO:0004842|GO:0016567
Pte4g00164 1472 ProSiteProfiles Trp-Asp (WD) repeats profile. 1228 1262 IPR001680 GO:0005515
Pte4g00164 1472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1438 1472 - -
Pte4g00164 1472 MobiDBLite consensus disorder prediction 306 324 - -
Pte4g00164 1472 Gene3D - 1397 1472 IPR015943 GO:0005515
Pte4g00164 1472 Pfam WD domain, G-beta repeat 1182 1215 IPR001680 GO:0005515
Pte4g00164 1472 Pfam WD domain, G-beta repeat 1224 1259 IPR001680 GO:0005515
Pte4g00164 1472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1228 1262 - -
Pte4g00164 1472 SUPERFAMILY ARM repeat 641 1171 IPR016024 -
Pte4g00164 1472 Gene3D - 625 927 IPR011989 -
Pte4g00164 1472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 479 575 IPR013083 -
Pte4g00164 1472 MobiDBLite consensus disorder prediction 378 407 - -
Pte4g00164 1472 SMART WD40_4 1389 1425 IPR001680 GO:0005515
Pte4g00164 1472 SMART WD40_4 1221 1260 IPR001680 GO:0005515
Pte4g00164 1472 SMART WD40_4 1178 1216 IPR001680 GO:0005515
Pte4g00164 1472 SMART WD40_4 1428 1470 IPR001680 GO:0005515
Pte4g00164 1472 SUPERFAMILY RING/U-box 484 567 - -
Pte4g00164 1472 Gene3D - 1174 1340 IPR015943 GO:0005515
Pte4g00164 1472 SMART Ubox_2 498 562 IPR003613 GO:0004842|GO:0016567
Pte4g00164 1472 CDD RING-Ubox_PUB 496 548 IPR045210 -
Pte4g00164 1472 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 1471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00164 Pte-Chr4 3532311 3539084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00164 496 744 U-box Gene Family AT1G29340 28.740 3.97e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00164 - - qsa:O6P43_016277 1974.9