Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00150 ATGGGCAACTGTTGCAGTGGCAACTCCAATGATGCCCCGGACGAAGCTAACAAGGGAGAAGCCAACGTTAACTCAGAACCCAAAAATCAAAGTCATGGCTCCGCACAGGAAGGCACCTCCTCCCCCTCACGTGCAAAGCCTTCTCCTTCATCCTCTCCACCAATTGGACCCGTCTTAGGCAGGCCAATGGAGGATATCAAGCAAACGTACCATATGGGCAAAGAGCTCGGCCGAGGACAATTCGGAATCACCCATTTGTGTACACATAAGGCGACAGGTGAAAAGTTTGCATGCAAGACCATAGCAAAGAGAAAGCTCACGAACAAGGAGGACATAGAAGATGTAAGGAGGGAGGTTCAAATCATGCACCACTTGACAGGCCAAGCAAACATCGTAGAACTCAAGGGAGCTTATGAGGACAAATATTCTGTTCATTTGATTATGGAGTTGTGTGAAGGAGGAGAGCTTTTTGATCGGATAATTGCAAAGGGTCATTATACCGAACGTGCAGCAGCATCCTTATTGAGAACAATTGTTCAGATGGTTCATACATGCCATTCTTTGGGGGTCATTCATAGGGATCTCAAGCCTGAGAATTTCCTTTTGTTGAATAAGGATGAGAACTCACCACTCAAGGCAACGGATTTCGGTCTATCTGTTTTTTACAAACAAGGTGAGTTGTTCAAAGATATAGTTGGCAGCGCATACTACATTGCACCAGAAGTCTTGAAGAGGAGATATGGACCCGAAGTTGATATATGGAGTGTAGGGGTCATGCTATATATTCTACTAAGTGGGGTTCCTCCGTTTTGGGCTGAATCTGAACATGGTATATTCAATGCTATCTTGCGTGGCCAAGTTGATTTTAGCAGTGATCCATGGCCCTCAATTTCACCTGCAGCCAAAGATCTCGTCAGAAAAATGTTGGATACAAATCCCAAGCAAAGGTTGACGGCCTACCAAGTTCTAAATCATCCATGGATCAAGGAGGATGGAGAAGCACCAGACACTCCTCTTGACAATACAGTATTGAATAGGCTAAAACAGTTCAGAGCTATGAACAAATTCAAGAAAGTTGCTCTCAGGGTTATTGCTGGGTGTTTATCAGAAGAAGAAATTATGGGATTGAAACAGATGTTCAAGAGCATGGATACTGACAACAGTGGGACAATTACACTTGAAGAGTTGAAGCAAGGTCTAGCTAAGCAGGGAACAAGGTTGTCCGAATATGAAGTCAAACAATTAATGGAAGCTGCTGATGCTGATGGAAATGGTACTATAGATTATGACGAATTCATCACGGCAACAATGCACTTGAACAGAACGGATAGAGAAGAACATCTGTACACTGCTTTCCAGTACTTTGATAAAGATAATAGCGGGTATATCACGACTGAAGAGCTTGAGCAAGCTCTCCGTGAATATGGCATGCACGATGGAAAGGAAATAAAGGAAATAGTTTCTGAAGTTGATTCAGATAACGATGGCCGGATTAACTACGATGAATTTGTGGCAATGATGAGAAAAGGAAATCCAGAAGGGAATGGTCCAAAGAAGAGGCGTGATGATGTGTTTGTATGA 1581 0.4339 MGNCCSGNSNDAPDEANKGEANVNSEPKNQSHGSAQEGTSSPSRAKPSPSSSPPIGPVLGRPMEDIKQTYHMGKELGRGQFGITHLCTHKATGEKFACKTIAKRKLTNKEDIEDVRREVQIMHHLTGQANIVELKGAYEDKYSVHLIMELCEGGELFDRIIAKGHYTERAAASLLRTIVQMVHTCHSLGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGELFKDIVGSAYYIAPEVLKRRYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGQVDFSSDPWPSISPAAKDLVRKMLDTNPKQRLTAYQVLNHPWIKEDGEAPDTPLDNTVLNRLKQFRAMNKFKKVALRVIAGCLSEEEIMGLKQMFKSMDTDNSGTITLEELKQGLAKQGTRLSEYEVKQLMEAADADGNGTIDYDEFITATMHLNRTDREEHLYTAFQYFDKDNSGYITTEELEQALREYGMHDGKEIKEIVSEVDSDNDGRINYDEFVAMMRKGNPEGNGPKKRRDDVFV* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00150 526 MobiDBLite consensus disorder prediction 1 15 - -
Pte4g00150 526 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Pte4g00150 526 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Pte4g00150 526 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
Pte4g00150 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Pte4g00150 526 ProSiteProfiles EF-hand calcium-binding domain profile. 481 513 IPR002048 GO:0005509
Pte4g00150 526 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Pte4g00150 526 Pfam EF-hand domain pair 376 436 IPR002048 GO:0005509
Pte4g00150 526 Pfam EF-hand domain pair 445 508 IPR002048 GO:0005509
Pte4g00150 526 CDD STKc_CAMK 70 327 - -
Pte4g00150 526 MobiDBLite consensus disorder prediction 1 61 - -
Pte4g00150 526 SMART efh_1 447 475 IPR002048 GO:0005509
Pte4g00150 526 SMART efh_1 482 510 IPR002048 GO:0005509
Pte4g00150 526 SMART efh_1 375 403 IPR002048 GO:0005509
Pte4g00150 526 SMART efh_1 411 439 IPR002048 GO:0005509
Pte4g00150 526 Gene3D Phosphorylase Kinase; domain 1 72 155 - -
Pte4g00150 526 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00150 526 ProSitePatterns Protein kinases ATP-binding region signature. 76 103 IPR017441 GO:0005524
Pte4g00150 526 Gene3D - 336 511 - -
Pte4g00150 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 65 503 - -
Pte4g00150 526 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00150 526 MobiDBLite consensus disorder prediction 22 46 - -
Pte4g00150 526 FunFam calcium-dependent protein kinase 1 156 335 - -
Pte4g00150 526 SUPERFAMILY EF-hand 368 508 IPR011992 -
Pte4g00150 526 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Pte4g00150 526 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Pte4g00150 526 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00150 526 Gene3D Transferase(Phosphotransferase) domain 1 156 335 - -
Pte4g00150 526 FunFam Calcium-dependent protein kinase 1 72 155 - -
Pte4g00150 526 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Pte4g00150 526 SUPERFAMILY Protein kinase-like (PK-like) 47 353 IPR011009 -
Pte4g00150 526 FunFam Calcium-dependent protein kinase 1 336 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00150 Pte-Chr4 3338694 3341106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00150 1 525 EF-hand Containing Proteins AT5G12180 80.718 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte4g00150 Pkinase 2.9e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00150 K13412 - qsa:O6P43_020973 909.442