Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00136 ATGTGGTCCTCTGCAAGAACTACCGACCCCATCAATTATGGTCCTACAGAGTCGGGGATGGCGGGTGTGCGTGATGTCTTTGTGGTGACTCCGGCCTCTTCTTTCCACCACAACAGTAGTCATCACCATGAACCTTGCAGCATCATGTCTGATGTCTCTAACCCAGCCACTGCCCTTGGTGTTGGAGTTGGCGTTGGTGTAAATGTGATTCCTATACTCTCTGCATCTGGTTGCTTTGCTCCATCAAATATAAACTCAGATACGGACTGCCTGTTAAGCAATCGAAACCGTGGCAGTAGTGGAATGCAGTTGTGGCAGAATCAGTATTTAAAGAAACAAAAAGGACTTGTTGATCAGGACGCCAATCCTTCTCCAAATTTCGTTCAAACCATTAGTGGTGTTGGTTTAAGTACTTCAGCTGCAATGACAAGCTCGGCTACCACATGCCAGGATTGTGGAAACCAAGCGAAGAAAGATTGCGATCATCGGAGGTGTAGGACTTGCTGTAAAAGTCGAGGTTTTGATTGCTCCACTCACGTGAAAAGCACGTGGGTTCCAGCCGCTCGCCGGAAAGAACGTCAGCTCATGGCTGCTGCAGCAGTCGGTACTGCTGGATCTACAGTTTCTACTTCTGTTGCCAAGAAACCTCGACTCGTTGCTTCACAAGCTACAACAACTTCTCATACGTCAACTTCCCACACTCCTCCTCGAAGCTATGAAACTAGCTCAGGTCATCAAGATGCAAGTTTCAAGGAGTCATTACCTAGTCAAGTACGTGCGCCTGCAGTATTCAAGTGTGTGAGAGTGACAGGCATAGAAAATGGGGAAGACGAGTACGCGTATCAGGCTGTGGTGAAGATCGGGGGTCATGTGTTTAAAGGTCTTCTGTATAATCAAGGTGTTGAAAATAGAGATGTATATCCAAATCTATCTGATCTGCATTTGGGTGGAGTCAGTAGTAGTGGTAATGGCGCCAAAGGGGCTCCTTCATCTTCTCCAATTATTGACCCTAACGATGTCTATGCTGCCTCTGGAGGTTTTATTGGTGGTTCAGTTTATGGCAACCCTATAAATTGA 1077 0.467 MWSSARTTDPINYGPTESGMAGVRDVFVVTPASSFHHNSSHHHEPCSIMSDVSNPATALGVGVGVGVNVIPILSASGCFAPSNINSDTDCLLSNRNRGSSGMQLWQNQYLKKQKGLVDQDANPSPNFVQTISGVGLSTSAAMTSSATTCQDCGNQAKKDCDHRRCRTCCKSRGFDCSTHVKSTWVPAARRKERQLMAAAAVGTAGSTVSTSVAKKPRLVASQATTTSHTSTSHTPPRSYETSSGHQDASFKESLPSQVRAPAVFKCVRVTGIENGEDEYAYQAVVKIGGHVFKGLLYNQGVENRDVYPNLSDLHLGGVSSSGNGAKGAPSSSPIIDPNDVYAASGGFIGGSVYGNPIN* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00136 358 MobiDBLite consensus disorder prediction 212 254 - -
Pte4g00136 358 NCBIfam putative zinc finger domain, LRP1 type 148 190 IPR006510 -
Pte4g00136 358 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 48 344 IPR007818 GO:0003700|GO:0006355
Pte4g00136 358 MobiDBLite consensus disorder prediction 212 253 - -
Pte4g00136 358 Pfam Domain of unknown function (DUF702) 147 302 - -
Pte4g00136 358 NCBIfam LRP1 C-terminal domain 254 301 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00136 Pte-Chr4 3107706 3109678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00136 3 340 C2H2 Transcription Factor Family AT5G12330 48.986 7.67e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pte4g00136 DUF702 3.3e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00136 - - jre:108994634 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00136 4 3107706 3109678 Pte4g00136 4 3107706 3109678 RCT