Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00133 ATGAACAGAAATGTAACTTGTCATTTATATTTGTTACTCTTAATGGCCATTTCCTGGGTTGACACTTCATGGACTTTCTATTTTTTTTTTCCTCTGCATGAATGCTGGATGTGCTTATCTTGGGGTATATTCTCACATTTGTTGCAGGCCATCACTGCTTTAAAGAAAGGGGCATACTTGCTTAAGTATGGGAGAAGGGGCAAGCCCAAATTTTGCCCCTTTCGACTTTCCAATGATGAATCAGTTTTAATATGGTTCTCAGGGAAGGAAGAGAAACACCTCAAATTGAGTCATGTTTCTAGAATCATATCTGGACAGCGTACACCAATTTTTCAAAGGTATCCACGGCCTGAAAAGGAGTACCAATCCTTTTCTCTCATATATAATGACAGGTCACTGGACTTGATATGCAAAGATAAAGATGAAGCAGAGGTCTGGTTTAGCGGTTTAAAAGCATTAATTTCACGGAGCCATCAGCGGAAATGGAGAGCCGAATCAAGGAGTGATGGTGTTTCGTCTGAAGCCAATAGTCCTCGGACATACACACGAAGAAGTTCTCCACTTAATTCTCCATTTGGAAGCAATGAGAGCTTGCAAAAGGATAGTGGAGATCAACTTCGCCTTCATAGTCCTTATGAAAGTCCCCCTAAGAATGGTCTTGATAAAGCATTATCAGATGTAATACTCTATGCTGTTCCCCCCAAGGGATTCTTCCCCTCAGATTCTGCTAGTGGATCTGTCCACTCTATATCATCTGGAGGATCAGATAGTATACATGGCCACATGAGAACAATGGCAATGGATACTTTTAGAGTTAGTCTGTCAAGTGCTGTTAGCTCTTCTAGTCACGGATCTGGTCATGATGATGGAGATGCACTAGGTGATGTTTTCATCTGGGGTGAAGGCACAGGGGATGGTGTTCTTGGTGGTGGATCTCATCGAGTGGGAAGTTCGTATGGTGTGAAAATGGATTCATTGTTGCCTAAAGCCTTAGAATCTGCAGTGGTACTTGATGTACAAAATATTGCATGCGGTGGGCGGCATGCTGCGTTAGTAACTAAACAAGGAGAAATTTTCTCCTGGGGTGAGGAATCAGGAGGCAGGCTTGGTCATGGCGTAGACTCCGACGTTATGCACCCAAAACTCATAGAAGCTCTCAGTAATACAAATATTGAACTTGTAGCATGCGGTGAATATCATACTTGTGCTGTAACACTTTCAGGTGATCTTTATACATGGGGTGATGAAACATACAATTTTGGTCTATTGGGGCATGGAAATGAAGTGAGCCATTGGGTTCCAAAGAGAGTAAATGGACCCCTGGAAGGAATTCATGTTTCTTCTATCTCTTGTGGACCCTGGCACACAGCTGTTGTAACATCTTCTGGGCAACTATTTTCTTTTGGAGATGGCACATTTGGTGTTCTGGGCCATGGTGATCGGAAAAGTGTTTCCATACCTAGGGAAGTTGAATCTCTTAAGGGTCTCCGCACTGTGCGGGCTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTGGAAGTTATGGTTGGGAATTCTAGTTCTAGCAACTGCTCTTCAGGGAAGTTGTTCACATGGGGTGATGGAGATAAAGGGCAACTTGGGCATGGTGATAAGGAGGCCAAACTAGTTCCAACTTGTGTGGCTGCTCTTGTTGAACCCAACTTTTGCCAAGTTGCTTGTGGGCATAGTCTTACTGTTGCACTTACAACCTCAGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGTCAATTAGGAAATCCTCAAGCTGAGGGGAAGCTGCCAAGCCCTGTAGAAGGGAAACTCTCCAAGAGTTTTGTGGAGGAGATAGCTTGTGGCGCATACCATGTTGCTGTTTTAACTTCAAGAACTGAAGTTTACACTTGGGGAAAAGGAGCAAATGGTCGTTTAGGCCAAGGGGATGTAGATGACAGAAATACCCCAACATTGGTAGAAGCTCTCAAAGATAAACAAGTCAAGAGTATTGCTTGTGGTACCAATTTCACAGCAGCTATTTGCCTTCATAAGTGGGTATCTGGAATTGACCAGTCTATGTGTTCTGGCTGCCGTCTACCTTTTAATTTCAAAAGGAAACGTCACAATTGTTACAATTGTGGACTTGTTTTCTGTCATTCATGCAGCAGTAAAAAGTCTCTTAAGGCTTCTATGGCACCAAATCCCAACAAACCCTATCGTGTCTGTGATAATTGTTTTAACAAACTAAGAAAAGCTATGGAAACAGATGTTTCAACCCATTCTTCTATGAGTAAAAGAGGAAGTATTAATCAGCTACCTTTGGAGTCCGTTGAGAAAGATGACAAGTTGGACTCTAGATCTCGTACACAGCTGGCGAGGTTTTCTTCAATGGAATCCTTGAAGCAAGTTGAAACCCGATCGTCCAAGAAGAACAAGAAATTAGAATTTAACAGCAGTCGAGTCTCACCTGTTCCTAATGGAACTTCTCAATGGGGAGCACTTAATATTTCTAAATCTCTTAATCCAGTATTTGGTTCATCTAAGAAGTTTTTCTCTGCATCTGTTCCTGGATCTAGAATTGTTTCTCGGGCTACATCCCCAATATCAAGACGAGCCAGCCCACCTCGTTCAACAACCCCAACTCCAACATTAGGAGGACTCACCTCTCCTAAGATAGTTGTGGATGATGCTAAAAGGACCAATGACAATCTAAGTCAGGAGGTTGTTAAGTTAAGGGCGCAGGTTGAAAATCTCACTCGCAAAGCCCAACTTCAAGAAATTGAGCTGGAAAGATCAACTAAACAGTTGAAGGAAGCAATAGCGATTGCTGGTGAAGAAACTGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCTCTTACAGCCCAATTGAAGGAAATGGCTGAGAGACTGCCTGTAGGAGCTGCTCGGACTGTCAAGTCACCTTCCCTTGCTTCCCTTGGTTCCAATCCTATTTCTAGTGAACTTTGTAATATCTCTCTGGACAGAATGAGTATTCAATCAACAGCCCAAGAGCAAGATTCAAATGGTTCCAATGGTCAATTCCTGTCTAATGGACTGGGCACAAACCCTAATCGTTGTTCCAATCTCAACAAACAGAATCAATCAGATGCCACAGCCAGGAATGGGATCAGAACAAAAGAAACAGAGTCTCGTAATGAAACTGAGTGGGTAGAGCAGGATGAACCTGGTGTATATATAACTCTTACCTCCCTTCCAGGAGGTGTAATTGATCTAAAGAGGGTTCGGTTCAGGTACACAAACACATTTGCTAGTAGTACTAAATTGTTAACGAGGTTTTATTCTCATCCTTCCTCTTGCAACAATGTTGAAGCATGA 3357 0.4281 MNRNVTCHLYLLLLMAISWVDTSWTFYFFFPLHECWMCLSWGIFSHLLQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRAESRSDGVSSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDQLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPSDSASGSVHSISSGGSDSIHGHMRTMAMDTFRVSLSSAVSSSSHGSGHDDGDALGDVFIWGEGTGDGVLGGGSHRVGSSYGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVMHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDETYNFGLLGHGNEVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGQLFSFGDGTFGVLGHGDRKSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGQLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQAEGKLPSPVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGQGDVDDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAMETDVSTHSSMSKRGSINQLPLESVEKDDKLDSRSRTQLARFSSMESLKQVETRSSKKNKKLEFNSSRVSPVPNGTSQWGALNISKSLNPVFGSSKKFFSASVPGSRIVSRATSPISRRASPPRSTTPTPTLGGLTSPKIVVDDAKRTNDNLSQEVVKLRAQVENLTRKAQLQEIELERSTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGAARTVKSPSLASLGSNPISSELCNISLDRMSIQSTAQEQDSNGSNGQFLSNGLGTNPNRCSNLNKQNQSDATARNGIRTKETESRNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFRYTNTFASSTKLLTRFYSHPSSCNNVEA* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00133 1118 SUPERFAMILY RCC1/BLIP-II 293 684 IPR009091 -
Pte4g00133 1118 SUPERFAMILY FYVE/PHD zinc finger 683 754 IPR011011 -
Pte4g00133 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 449 459 IPR000408 -
Pte4g00133 1118 FunFam Putative E3 ubiquitin-protein ligase HERC1 689 757 - -
Pte4g00133 1118 Coils Coil 893 934 - -
Pte4g00133 1118 Pfam Unstructured region between BRX_N and BRX domain 985 1054 - -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 755 831 - -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 861 888 - -
Pte4g00133 1118 SUPERFAMILY PH domain-like 48 154 - -
Pte4g00133 1118 CDD PH_PLC_plant-like 47 155 - -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 527 578 IPR000408 -
Pte4g00133 1118 Gene3D - 47 163 IPR011993 -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 463 514 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 356 404 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 632 679 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 526 575 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 407 459 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 462 511 IPR000408 -
Pte4g00133 1118 Pfam Regulator of chromosome condensation (RCC1) repeat 578 627 IPR000408 -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 408 462 IPR000408 -
Pte4g00133 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 265 516 - -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 1007 1060 - -
Pte4g00133 1118 Pfam Transcription factor BRX N-terminal domain 944 977 IPR027988 -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 169 201 - -
Pte4g00133 1118 CDD FYVE_like_SF 692 745 - -
Pte4g00133 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 342 352 IPR000408 -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 755 770 - -
Pte4g00133 1118 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 501 511 IPR000408 -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 816 831 - -
Pte4g00133 1118 ProSiteProfiles BRX domain profile. 1061 1118 IPR013591 -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 407 IPR000408 -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 579 630 IPR000408 -
Pte4g00133 1118 FunFam PH, RCC1 and FYVE domains-containing protein 1 517 688 - -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 355 IPR000408 -
Pte4g00133 1118 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 90 965 - -
Pte4g00133 1118 SMART fyve_4 681 750 IPR000306 GO:0046872
Pte4g00133 1118 MobiDBLite consensus disorder prediction 861 885 - -
Pte4g00133 1118 Pfam FYVE zinc finger 683 749 IPR000306 GO:0046872
Pte4g00133 1118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 694 755 IPR013083 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 568 586 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 408 424 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 449 465 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 465 479 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 339 352 IPR000408 -
Pte4g00133 1118 PRINTS Chromosome condensation regulator RCC1 signature 626 647 IPR000408 -
Pte4g00133 1118 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 687 749 IPR017455 -
Pte4g00133 1118 Pfam Pleckstrin homology domain 49 154 IPR001849 -
Pte4g00133 1118 Gene3D - 525 693 IPR009091 -
Pte4g00133 1118 Gene3D - 271 524 IPR009091 -
Pte4g00133 1118 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 631 682 IPR000408 -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 164 218 - -
Pte4g00133 1118 MobiDBLite consensus disorder prediction 1007 1048 - -
Pte4g00133 1118 Pfam Transcription factor regulating root and shoot growth via Pin3 1060 1091 IPR013591 -
Pte4g00133 1118 Coils Coil 949 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00133 Pte-Chr4 2994110 3000751 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00133 1057 1090 Major Intrinsic Protein MIP AT1G31880 55.882 8.46e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00133 - - cave:132163343 1802.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte4g00133 4 2994110 3000751 Pte4g00133 4 2994110 3000751 RCT