Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00095 ATGGACTTCGTAGACCCAGTAGTCCCAAATTCCCAAATACCAAAAAAGGTAAGCCGGAAAACAGTTGAGCAAGCTGTTAATTCCCTTCTCAGATGGCGGAACTCCAAGTTTCAGAGCGAAAAATCTAAACTTTTTGGCCCAGATGATGAGTTCGTTTACCTCATCCTCACCCTCAAGAAAATCCCTTCAAAGGGTAGCGTTAACCCGTACAGAATTCTCCTTCCTCATTCCCTTACCTCTGAATTCTCCGAGAGTTGCTTGATCATTGATGACAGATCCAAATCGGGTATCAGTAAAGAAGATGCACAGAAGAAGATCAAGGCCGAAGGCATACCTATTTCCAACGTTCTTAAGCTGTCTAAGCTGAAATCCGATTACCAAGCATTTGACGCAAAACGTAAGTTGTGTAATTCTTACAACTTGTTTTTCGCTGATAGGAGAGTAATTCCATTACTGCCTAGTTTGATAGGGAGGAAGTTTTTTAGGAAGAAGAGGATTCCTTTGGCTTTGGATTTGACTCGTAAGAACTGGAAAGAGCAGATTGAGAAGGCATGCCGTTCTGCTCTGCTGTTCTTGACTACTGGCACTTGCAGTGTAGTTAAAGTTGCCAGGACTTCAATGGAGAAACACGAGATTGTCGAGAATGTAGTTGCCGCAATGGATGGCATAGTGGAAGTTGTGCCTAAAAAGTGGAAGAATGTTAGGTCTTTTCATCTTAAGTTGTTGGAGTCTTTATCATTGCCAATTTATCAGTCGCTGCCAGATTATACTTTGAAGATTGCTAGTGCGAATGTGAAGGAAGATGGTTTGAATGACGAAGAAGGGGAAGAGGTGAATGGAGATGAGGTGGAGAAGGATGGTAAGGTATCTAAGAAGAAGGGAAGGATTCATGAAGTTAGGAACATGGATGATAGTATTGATGACACGCTTGATGAAGATGACTTTGATGATGATAATGATGCTGATTTCAAGGAGGAGGAGGGTGGTGAGGGAAGGAATGTAATGGTGAAGAAGGAGAACAAGAGAGGTAAGGTCCAATGGGCGGCTCCTATGGAGATGGATGGGTTGAAGAGGATGAAGTCAGCTAAACACAAGAGTGAAGATGGTGGAAAAAATAAAGGAGATAAAGCACCAATCAAAGTGAACAAGGGTGGCGTAATCAAGGGGAAGAGGTGA 1176 0.4269 MDFVDPVVPNSQIPKKVSRKTVEQAVNSLLRWRNSKFQSEKSKLFGPDDEFVYLILTLKKIPSKGSVNPYRILLPHSLTSEFSESCLIIDDRSKSGISKEDAQKKIKAEGIPISNVLKLSKLKSDYQAFDAKRKLCNSYNLFFADRRVIPLLPSLIGRKFFRKKRIPLALDLTRKNWKEQIEKACRSALLFLTTGTCSVVKVARTSMEKHEIVENVVAAMDGIVEVVPKKWKNVRSFHLKLLESLSLPIYQSLPDYTLKIASANVKEDGLNDEEGEEVNGDEVEKDGKVSKKKGRIHEVRNMDDSIDDTLDEDDFDDDNDADFKEEEGGEGRNVMVKKENKRGKVQWAAPMEMDGLKRMKSAKHKSEDGGKNKGDKAPIKVNKGGVIKGKR* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00095 391 MobiDBLite consensus disorder prediction 305 324 - -
Pte4g00095 391 MobiDBLite consensus disorder prediction 325 345 - -
Pte4g00095 391 CDD Ribosomal_L1 22 249 IPR028364 -
Pte4g00095 391 MobiDBLite consensus disorder prediction 281 304 - -
Pte4g00095 391 MobiDBLite consensus disorder prediction 356 378 - -
Pte4g00095 391 MobiDBLite consensus disorder prediction 270 391 - -
Pte4g00095 391 Gene3D - 96 187 IPR016095 -
Pte4g00095 391 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 25 244 - -
Pte4g00095 391 Gene3D - 191 246 - -
Pte4g00095 391 Pfam Ribosomal protein L1p/L10e family 35 244 IPR028364 -
Pte4g00095 391 SUPERFAMILY Ribosomal protein L1 43 250 IPR023674 -
Pte4g00095 391 FunFam Ribosomal protein L1p/L10e family 95 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00095 Pte-Chr4 1626966 1629703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00095 138 240 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 27.184 4.57e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00095 K14775 - qsa:O6P43_014803 427.557