Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00082 ATGGCACCTGGTTTCGTATTCGAAGCTCCCAGCGATGAAGAACACGAATTATCAGAGTCTGAAGAAGAAGAAGAAGGACATGGAGAAGACCCACGACAACCACAACAGGAAGAACAATCAACTGAAGGTGAAAACGAAGAGGATGACAACGACGACGATGAAGAAGTAAAAGTTTCCAAGAAAAAAACTCAGTCTCCATGGGACTTTGCTAAGTATACTGAGTCAGTTGCTGAAGAACACGCTCAAAGAAATACAACCTCTATTGATTTCAAAATATCCAAAGCACTTGAAAACCTTCCCCAACCAATCACTAAACCTGATGATGAAGACAGTCAAAGCTCCAAGCAGGAATCCAGTAAAGAAGAAGATCACATGGAAGAAGACGAGTTGGAGGATGAGGATGAAGGTGGCGATGCTGGTGAAAGTAAGCCTTTTTTTGAGCCGACTGTTGGAGTTTCTTACCATGCCAATTCATTCATGGAGCTCAATCTCTCTCGCCCTTTGCTTCGGGCTTGTGAAGCCCTTGGTTACTCTAAACCAACGCCAATTCAGGCTGCTTGTGTACCACTGGCGTTAATGGGTCGTGATATATGCGGCAGTGCCATTACTGGGTCTGGCAAGACAGCGGCATTTGCGTTGCCTACATTAGAAAGACTACTGCTACGTCCAAAAGGTGCTCCTCAAGCAATTAGAGTCCTTATTCTTACTCCAACCAGAGAATTGGCAGTCCAGATCCACAGTATGATAGGGAACCTTGCACAGTATACAGACATAAGATGCTGCCTCGTAGTGGGTGGTCTTTCAAGCAAGGACCAAGAAGCAAACTTAAGGAAAATGCCAGATATTGTTGTGGCAACTCCAGGACGCATGGTCGATCATTTATGCAATTCAATGTCTGTTGACTTAGATGATTTGGGAATTCTAATCCTTGACGAAGCAGATCGGCTTTTGGAGCTAGGATTTAGTGCTGAAATTAATGAGATTGTTCGCCGATCTTCCAAAAGAAGGCAGACAATGCTGTTTTCAGCAACAATGACTGAGGAGATTGATGAACTTGTAAAGCTTTCCCTAACAAAACCTGTGCGTTTATCTGCTGACCCATCAACAAAACGACCAGCAAAACTGACTGAGGAAGTGGTTAGAATACGTCGAATGCGGGAGGCAAATCAAGAAGCAGTTCTTCTTTCTTTGTGCTCAAAGACTTTTACTTCAAGAGTGATCATATTCAGTGGGACAAAGCCAGCTGCACATAGGTTGAAGATAATATTTGGATTATCTGGTTTAAAAGCTGCTGAATTGCATTCAGATTGCACTCAAGCTCAGCGCCTTGAAGCCATAGAACTTTTTAGAAGGCAGCAAGTTGACTTTTTAATCGCTACAGATGTGGCTGCCCGGGGTCTTGACATTATTGGGGTAGAAACAGTTATCAACTTTGCATGTCCACGTCATCTAAACAACTATGTTCATCGAGTGGGTCGAACAGCTAGAGCTGGCAGAGAAGGATATGCTGTTACATTTGTGACTGATAATGACCGATCTCTCTTAAAATCCATTGCAAAGCGGGCTGGTTCAAAGCTGAGGAGCCGAATCGTGGCCGAGCAATCCATAGCTAAATGGTCTCATGTAATTGAGCAAATGGAGGATCAAATATCTGAAATTCTTCAAGAAGAAAGGGCAGAGAAAGTTGCAAGGAAAGCTGAAATGGAAGCAAATAAGGCAGAAAATATGATTAAACATGCTGAAGAGATTCATGCACGTCCTCGTAAAACCTATATTGTCTCAAATAAAGAGAAGAAGCTTATTGCTAAAGCTGAAAAGAACTCTCAGGAGAGATTGAATAGTTCTGGAAAGGAGGAGATCAGTGCCCAACAAGCTGAAGAACTCAAAATGAAGGAAAAGAGGAAGAGAGAGAGAGAAAAAAATATGCCGAGGAAGAAACGCAGGAAATTAGAAGCAGCTAGAGAGATGTTGGATGATGAAGACCAAATCAGCAAGGGCGGTGAGAAAAATAATAAAGATAAAGCTGGAATTTCACTTATGGATGCAGCATACCGAAGGGCCAAGGCAGTGAAGGCTCAGAAGAAGGCACTGGATAGTGGAAAGACAGTGAATAGTAGTAAAAAGAAATCAAATCGTCCAAAAACTCAGTCAAGAACAGAAGAGATGGAACAGCTATTTCAGACCGACATGACCGATAGAAATCGGAAGAGAGGAAAACTTGGAGGGGGAAAGAAATCCAAAAGTTCATTTAAAAGCAAGTCAAGGTATAAGAGGAGGTGA 2280 0.4259 MAPGFVFEAPSDEEHELSESEEEEEGHGEDPRQPQQEEQSTEGENEEDDNDDDEEVKVSKKKTQSPWDFAKYTESVAEEHAQRNTTSIDFKISKALENLPQPITKPDDEDSQSSKQESSKEEDHMEEDELEDEDEGGDAGESKPFFEPTVGVSYHANSFMELNLSRPLLRACEALGYSKPTPIQAACVPLALMGRDICGSAITGSGKTAAFALPTLERLLLRPKGAPQAIRVLILTPTRELAVQIHSMIGNLAQYTDIRCCLVVGGLSSKDQEANLRKMPDIVVATPGRMVDHLCNSMSVDLDDLGILILDEADRLLELGFSAEINEIVRRSSKRRQTMLFSATMTEEIDELVKLSLTKPVRLSADPSTKRPAKLTEEVVRIRRMREANQEAVLLSLCSKTFTSRVIIFSGTKPAAHRLKIIFGLSGLKAAELHSDCTQAQRLEAIELFRRQQVDFLIATDVAARGLDIIGVETVINFACPRHLNNYVHRVGRTARAGREGYAVTFVTDNDRSLLKSIAKRAGSKLRSRIVAEQSIAKWSHVIEQMEDQISEILQEERAEKVARKAEMEANKAENMIKHAEEIHARPRKTYIVSNKEKKLIAKAEKNSQERLNSSGKEEISAQQAEELKMKEKRKREREKNMPRKKRRKLEAAREMLDDEDQISKGGEKNNKDKAGISLMDAAYRRAKAVKAQKKALDSGKTVNSSKKKSNRPKTQSRTEEMEQLFQTDMTDRNRKRGKLGGGKKSKSSFKSKSRYKRR* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00082 759 MobiDBLite consensus disorder prediction 644 675 - -
Pte4g00082 759 Coils Coil 536 583 - -
Pte4g00082 759 MobiDBLite consensus disorder prediction 123 138 - -
Pte4g00082 759 Coils Coil 622 642 - -
Pte4g00082 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 363 IPR027417 -
Pte4g00082 759 MobiDBLite consensus disorder prediction 605 759 - -
Pte4g00082 759 MobiDBLite consensus disorder prediction 1 146 - -
Pte4g00082 759 Gene3D - 92 365 IPR027417 -
Pte4g00082 759 MobiDBLite consensus disorder prediction 713 737 - -
Pte4g00082 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 513 IPR027417 -
Pte4g00082 759 Pfam DEAD/DEAH box helicase 181 351 IPR011545 GO:0003676|GO:0005524
Pte4g00082 759 MobiDBLite consensus disorder prediction 622 637 - -
Pte4g00082 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 537 IPR001650 -
Pte4g00082 759 SMART helicmild6 413 498 IPR001650 -
Pte4g00082 759 SMART ultradead3 176 378 IPR014001 -
Pte4g00082 759 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 111 715 - -
Pte4g00082 759 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 309 317 IPR000629 -
Pte4g00082 759 MobiDBLite consensus disorder prediction 738 759 - -
Pte4g00082 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 363 IPR014001 -
Pte4g00082 759 CDD DEADc_DDX27 168 364 - -
Pte4g00082 759 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Pte4g00082 759 Pfam Helicase conserved C-terminal domain 395 498 IPR001650 -
Pte4g00082 759 Gene3D - 374 635 IPR027417 -
Pte4g00082 759 MobiDBLite consensus disorder prediction 108 122 - -
Pte4g00082 759 CDD SF2_C_DEAD 375 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00082 Pte-Chr4 1388059 1395244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00082 158 515 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 2.52e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00082 K13181 - qsa:O6P43_013742 930.243