Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00081 ATGAGTTGCAATCCATTTCGCTTGTTACACAATAAAAGCAGCAGGAAGACATTAGCCAAGAGCATTGAAGAATACCATGACACGAAAACTTTAGCTACCTTTGCCAACATTTCCATACAAAATGATAACCCCGGGAGACGATGCATAGCAGATGAGGTCAAGAAAATAGGAAAAGGAAGCATCACTGCTCAGCCATTCAATTTCCGAGACCTATGTCTAGCTACCAAGAATTTTCATGAGGATAATATGATAGGAGAAGGTGGTTTTGGTAGGGTGTACAGAGGCCGACTTAGTAGCACTGATCAAGATGTTGCAGTCAAGCAACTTGACAGGAATGGCTTCCAAGGGAACAGGGAATTTCTTATAGAGGTTATGTTGTTGGGTCTTTTGCATCACCAACACCTTGTGAATTTGGTTGGATATTGTGCTGAAAAGAATCAAAGGCTTTTGGTGTATGAGTTTATGCCCAATGGTTCTTTGGAAGATCACCTTTTTGACTTGCCTGATGACAGTAAGCCTTTGGGTTGGAATACAAGAATAAAAATTGCTGAAGGTGCAGCCAAAGGACTTGAGTATTTACATGAAGCAGCAAAACCTCCAGTCATATACCGTGATTTCAAGGCTTCAAATGTCTTATTGGATGAGCACATGAATCCAAAACTGTCTGATTTTGGACTTGCAAAGCTTGCTCCAATAGGTGATATGACACATGTATCCACCAGAGTCATGGGCACCTATGGCTACTGTGCACCAGAGTATGCACAGACAGGCAAATTGACTTCCAAATCTGACGTCTATAGCTTTGGAGTTGTGCTATTGGAGATGATCACAGGAAGGAGAGTCATTGATCTGAAAAGACCAGCAAAAGAACAGAACTTAATTCGTTGGGCAAAACCACTATTGAAAGACAAAAGCAGATTTCGAGAAATGGTGGATCCATTGCTACAAGGGTGTTATCCTGCAAGAGGTTTATGCCAAGCTGTAGAGGTTGCAGCCATGTGCCTTAATGAGGATGCCACTGCTCGGCCAATGATGGGTGATGTTGTAACAGCTCTTGAGTTTTTGGCAAAGAAGAGGGACAGGGGTACTTAA 1092 0.4231 MSCNPFRLLHNKSSRKTLAKSIEEYHDTKTLATFANISIQNDNPGRRCIADEVKKIGKGSITAQPFNFRDLCLATKNFHEDNMIGEGGFGRVYRGRLSSTDQDVAVKQLDRNGFQGNREFLIEVMLLGLLHHQHLVNLVGYCAEKNQRLLVYEFMPNGSLEDHLFDLPDDSKPLGWNTRIKIAEGAAKGLEYLHEAAKPPVIYRDFKASNVLLDEHMNPKLSDFGLAKLAPIGDMTHVSTRVMGTYGYCAPEYAQTGKLTSKSDVYSFGVVLLEMITGRRVIDLKRPAKEQNLIRWAKPLLKDKSRFREMVDPLLQGCYPARGLCQAVEVAAMCLNEDATARPMMGDVVTALEFLAKKRDRGT* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00081 363 Pfam Protein kinase domain 78 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00081 363 Gene3D Phosphorylase Kinase; domain 1 45 154 - -
Pte4g00081 363 CDD STKc_IRAK 84 353 - -
Pte4g00081 363 PANTHER OS07G0668900 PROTEIN 41 359 - -
Pte4g00081 363 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte4g00081 363 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Pte4g00081 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Pte4g00081 363 SUPERFAMILY Protein kinase-like (PK-like) 61 355 IPR011009 -
Pte4g00081 363 Gene3D Transferase(Phosphotransferase) domain 1 155 362 - -
Pte4g00081 363 FunFam Serine/threonine-protein kinase PBS1 155 363 - -
Pte4g00081 363 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00081 Pte-Chr4 1363033 1365432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00081 51 360 Glycoside Hydrolase AT3G07070 66.774 3.56e-155 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Pte4g00081 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00081 - - qsa:O6P43_021135 524.242