Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00064 ATGATGCAGCAACCAGCAGCAGGTATCGTTCCACCACCGATGCAGGCTGTGAATGCGGATCTGCAGAACCAGCAATACCAGCAGCAGCAGGCATGGCTGGTGCAGCAGCAGCAGCAGCAACCTCAGCCGATTCCACCTCCAGTTGGATGGAATCCACAACCCGTGCCTCCGCCTCAGCCTTCTCAAGTGCATGCTCAGCCAACGCAACTGTATGCTGCGGCTGGTGCTGATGCCGTCAGCAATGAGATCCGGTCTCTTTGGATCGGTGACTTGCAGCCGTGGATGGACGAGAATTATCTCATGAACTGTTTCGCATTGACAGGAGAGGTTGCTTCAGTAAAGGTGATTCGTAACAAGCAAACAGGCATGCCAGAGGGCTATGGATTCATTGAATTTGTTTCTCATGCTGCTGCAGAAAGAATATTGCAGACCTATAATGGTGCTTTAATGCCAAACGTGGAGCAAACCTTCAGGTTGAATTGGGCTACACTTAGTGCTGGTGAGAGGCGTCAAGATGATGGTCCAGATTATACGATATTTGTTGGTGACTTAGCTGCTGATGTTCTTGATTATACACTCCAAGAAACTTTCAAAATGCACTATAAATCAGTGAAAGGAGCGAAGGTTGTCACTGATAGGACTACTGGACGTTCTAAGGGTTATGGTTTTGTGAGGTTTAGTGATGAAAAAGAACAATTGCGGGCAATGACTGAGATGAATGGTGTATATTGTTCATCAAGGCCCATGCGCGTAGGACCTGCTGCTAGCAAAAAACCAACTGGTGTGCAGCAATATCAGCAAGCTACCTACCCAAATGCTTCGGGGAATCAAGGCGAGAATGACCCTACTAATACAACAATATTTGTTGGAAATTTAGACCCAAGCGTTACAGATGATATGTTGAGATCATTGTTTGGTCAGTATGGTGATCTAGTTCATGTGAAAATACCAGTAGGAAAACGATGTGGTTTTGTTCAGTTTGCTAACAGGGCTAGTGCTGAACAAGCAATATCGATGCTGAATGGTAGCCAATTATTAGGACAAAGTATACGACTTTCATGGGGACGCAGCCCTTCGAACAAACAAGGTACTGAGCAGGCTCAATGGAGTAATGCATATTATCCTTATGGCCAAGGATATGATCCTTATTCTTATGCTCCTCCTACACAAGATCCAAACATGTACTATGGAGGTTATCCCAGTTATGGTGGTTACCAGCAGACTGGCGCATACCAACAGCCGCAGCAGTGA 1251 0.4612 MMQQPAAGIVPPPMQAVNADLQNQQYQQQQAWLVQQQQQQPQPIPPPVGWNPQPVPPPQPSQVHAQPTQLYAAAGADAVSNEIRSLWIGDLQPWMDENYLMNCFALTGEVASVKVIRNKQTGMPEGYGFIEFVSHAAAERILQTYNGALMPNVEQTFRLNWATLSAGERRQDDGPDYTIFVGDLAADVLDYTLQETFKMHYKSVKGAKVVTDRTTGRSKGYGFVRFSDEKEQLRAMTEMNGVYCSSRPMRVGPAASKKPTGVQQYQQATYPNASGNQGENDPTNTTIFVGNLDPSVTDDMLRSLFGQYGDLVHVKIPVGKRCGFVQFANRASAEQAISMLNGSQLLGQSIRLSWGRSPSNKQGTEQAQWSNAYYPYGQGYDPYSYAPPTQDPNMYYGGYPSYGGYQQTGAYQQPQQ* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00064 416 Gene3D - 169 262 IPR012677 -
Pte4g00064 416 Gene3D - 263 371 IPR012677 -
Pte4g00064 416 Gene3D - 15 168 IPR012677 -
Pte4g00064 416 MobiDBLite consensus disorder prediction 40 63 - -
Pte4g00064 416 CDD RRM1_SECp43_like 85 163 - -
Pte4g00064 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 66 369 - -
Pte4g00064 416 SUPERFAMILY RNA-binding domain, RBD 160 276 IPR035979 GO:0003676
Pte4g00064 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 151 IPR000504 GO:0003723
Pte4g00064 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 248 IPR000504 GO:0003723
Pte4g00064 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 350 IPR000504 GO:0003723
Pte4g00064 416 FunFam Polyadenylate-binding protein RBP47B 83 163 - -
Pte4g00064 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 357 IPR000504 GO:0003723
Pte4g00064 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 256 IPR000504 GO:0003723
Pte4g00064 416 CDD RRM2_SECp43_like 176 255 - -
Pte4g00064 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 164 IPR000504 GO:0003723
Pte4g00064 416 MobiDBLite consensus disorder prediction 1 63 - -
Pte4g00064 416 SUPERFAMILY RNA-binding domain, RBD 76 164 IPR035979 GO:0003676
Pte4g00064 416 SMART rrm1_1 286 353 IPR000504 GO:0003723
Pte4g00064 416 SMART rrm1_1 178 252 IPR000504 GO:0003723
Pte4g00064 416 SMART rrm1_1 85 160 IPR000504 GO:0003723
Pte4g00064 416 MobiDBLite consensus disorder prediction 17 39 - -
Pte4g00064 416 FunFam Polyadenylate-binding protein RBP45C 262 368 - -
Pte4g00064 416 FunFam Polyadenylate-binding protein RBP45C 167 261 - -
Pte4g00064 416 SUPERFAMILY RNA-binding domain, RBD 266 380 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00064 Pte-Chr4 1088229 1093457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00064 83 373 Eukaryotic Initiation Factors Gene Family AT2G23350 28.716 5.43e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00064 - - qsa:O6P43_013731 547.354