Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00056 ATGGAAGGCATTGTTGTGAGAAGGATCATTCCCTCAGACAATAGTTGCCTCTTCAATGCTGTGGGATATGTTATGGATCATGACAAACAAAAGGCTCCAGAGCTAAGACAGGTTATAGCGACCACAGTGGCGTGTGATAAAGAAAAATATAATGAAGCATTTCTTGGGAAGTCAAATGAAGAGTACTGTGCCTGGATTCTCAACCCAGAGAAGTGGGGAGGTGCAATTGAGCTCTCAATATTAGCGGATTATTATGGGCGTGAAATTGCAGCATATGATATCCAGACCACCAGATGTGATTTATATGGACAGGAAAAAAAGTACTCAGAACGAGTTATGCTGATTTACGACGGTCTACATTATGATGCATTAGCTATGTCTCCCTTTGAAGGAGCTCCAGATGAATTCGATCAGACTATATTTGCTGTAAAGATAGATAGGACTATCGGACCTGTTGAGGAAGTTACCCTTAGCTTGGTGAAGGACCAACAAAGGAAAAGGAGCTATACAGACACTGCTAACTTCACTTTGCGCTGTGGAGTATGTCAAATTGGAGTAATTGGCCAAAAGGAGGCAGTGGAGCATGCTCAGGCAACGGGCCATGTCAATTTTCAAGAATACAGATGA 627 0.4242 MEGIVVRRIIPSDNSCLFNAVGYVMDHDKQKAPELRQVIATTVACDKEKYNEAFLGKSNEEYCAWILNPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAMSPFEGAPDEFDQTIFAVKIDRTIGPVEEVTLSLVKDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00056 208 Gene3D - 1 173 - -
Pte4g00056 208 Pfam OTU-like cysteine protease 12 107 IPR003323 -
Pte4g00056 208 SUPERFAMILY Cysteine proteinases 8 124 IPR038765 -
Pte4g00056 208 FunFam ubiquitin thioesterase OTU1 1 173 - -
Pte4g00056 208 CDD OTU_plant_OTU1_2-like 3 166 - -
Pte4g00056 208 ProSiteProfiles OTU domain profile. 5 127 IPR003323 -
Pte4g00056 208 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 5 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00056 Pte-Chr4 1001751 1008541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00056 1 209 C2H2 Transcription Factor Family AT1G50670 84.211 5.98e-136 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00056 K13719 - zju:107432084 387.497