LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte4g00053	ATGGCAGAGTTGGGTCTGAGAAATTCAAGTAGAGGAGGGTTTCATACTCTGGTGCCCTTCAGGAGGCACAAGTATCAAAAAGAAATTTATGTGGGACAACGCTATTTTCAAAGGATCAAGGACGAGCATGCCCTCCTAAAGGCAACAGATTTTGGATTGTCAGTTTTCATTGACGAAGGGAAGGTCTACCGAGATATTGTTGGAAGTGCTTACTACGTTGCTCCTGAAGTTCTAAGGCATAGATACAGGAAAGAAATAGATATATGGAGTGCTGGAAAGGACTCATTGATTTTGAAAGCAAACCGTGGCCATCTATTTCAAGAAGTGCAAAGGATCTTGAACAGAAGATGGCTCACACAAGACCCAACGAAACGAATTACTGCTGCTCAAGTCCTAGAGCATCCATGGCTCAACGAAGGTGGAGATGCATCAGACAAAACTATTGACAGTGCTGTCTTGTCTAGAATGAAGCAATTCAGAGCAATGAATAAACTCAAGCAGCTTGCATTGAAGGTCATTGCAGAAAACCTTTCCAAAGAAGAGATCCAAGGGCTGAAGTCTATGTTTGCGAACATGGACACTGATAACAGTGGCACCATCACATATGAAGAACTCAAGGCTGGATTAGCTCAGCTTGGCTCAAAGCTTACAGAGGCTGAGGTCAAGCAGCTGATGGAAGCTGCAGATGTGAATGGAAATGGGTCAATTGACTTCATTGAATTTATTACGGCTACAATGCATAGGCATGGGCTTGTGAGAGATGAGCATCTGTACAAAGCGTTCCAATATTATGATCAAGGAATTATGTTTTGTTTTGGAGCATTTAACCTCGAATATGCAGTTTTGCCTAGAGTTTACAGCAACGGTGGGGTTCATTGA	879	0.4266	MAELGLRNSSRGGFHTLVPFRRHKYQKEIYVGQRYFQRIKDEHALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLRHRYRKEIDIWSAGKDSLILKANRGHLFQEVQRILNRRWLTQDPTKRITAAQVLEHPWLNEGGDASDKTIDSAVLSRMKQFRAMNKLKQLALKVIAENLSKEEIQGLKSMFANMDTDNSGTITYEELKAGLAQLGSKLTEAEVKQLMEAADVNGNGSIDFIEFITATMHRHGLVRDEHLYKAFQYYDQGIMFCFGAFNLEYAVLPRVYSNGGVH*	293

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte4g00053	292	ProSiteProfiles	EF-hand calcium-binding domain profile.	216	251	IPR002048	GO:0005509
	Pte4g00053	292	SUPERFAMILY	EF-hand	161	266	IPR011992	-
	Pte4g00053	292	Coils	Coil	202	222	-	-
	Pte4g00053	292	SMART	efh_1	220	248	IPR002048	GO:0005509
	Pte4g00053	292	SMART	efh_1	184	212	IPR002048	GO:0005509
	Pte4g00053	292	ProSiteProfiles	Protein kinase domain profile.	1	137	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte4g00053	292	Gene3D	-	178	246	-	-
	Pte4g00053	292	CDD	EFh	185	244	IPR002048	GO:0005509
	Pte4g00053	292	ProSitePatterns	EF-hand calcium-binding domain.	229	241	IPR018247	-
	Pte4g00053	292	Gene3D	Transferase(Phosphotransferase) domain 1	29	145	-	-
	Pte4g00053	292	PANTHER	SERINE/THREONINE-PROTEIN KINASE	42	266	-	-
	Pte4g00053	292	SMART	serkin_6	4	137	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte4g00053	292	SUPERFAMILY	Protein kinase-like (PK-like)	41	145	IPR011009	-
	Pte4g00053	292	Gene3D	-	155	266	-	-
	Pte4g00053	292	ProSitePatterns	EF-hand calcium-binding domain.	193	205	IPR018247	-
	Pte4g00053	292	FunFam	Calmodulin-2 A	174	284	-	-
	Pte4g00053	292	Pfam	Protein kinase domain	42	92	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte4g00053	292	Pfam	EF-hand domain pair	185	245	IPR002048	GO:0005509
	Pte4g00053	292	ProSiteProfiles	EF-hand calcium-binding domain profile.	180	215	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte4g00053	Pte-Chr4	940274	954157	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte4g00053	40	266	EF-hand Containing Proteins	AT3G20410	69.960	1.38e-115	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Pte4g00053		EF-hand_7	7.3e-12	CL0220

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte4g00053	K13412		-	cit:107176513	342.428