Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00052 ATGGTGGATTTGGACATATCAGTTCCTACTGCTTTTGATCCATTTGGTGACGCGAAAGACTCGAATGCCCCCGGAGCCAAGGATTATGTTCATATTCGAATCCAGCAGAGGAATGGAAAAAAGTGCCTGACCACTGTGCAAGGGCTGAATAAGGGTTTCAGCTACGAGAGAATTCTCAAAGATTTGAAGAAAGAGTTCTGCTGCAATGGGAATGTTGTGCAGGATAAGGAGCTAGGAAAGATCATCCAGTTGCAGGGGGATCAACGCAAGAACGTCTCTCAGTTCCTCGTTCAGGCTGGCCTTGCGCCAAAGGATCAAATCAAAATTCATGGTTTTTGA 339 0.4572 MVDLDISVPTAFDPFGDAKDSNAPGAKDYVHIRIQQRNGKKCLTTVQGLNKGFSYERILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLAPKDQIKIHGF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00052 112 Gene3D - 2 112 - -
Pte4g00052 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Pte4g00052 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Pte4g00052 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 6 112 - -
Pte4g00052 112 NCBIfam translation initiation factor SUI1 6 112 IPR005874 GO:0003743
Pte4g00052 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
Pte4g00052 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Pte4g00052 112 FunFam Eukaryotic translation initiation factor SUI1 2 112 - -
Pte4g00052 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00052 Pte-Chr4 939043 941347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00052 1 113 Eukaryotic Initiation Factors Gene Family AT5G54940 82.301 6.90e-67 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00052 K03113 - csv:101214921 205.682