Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00019 ATGACAATGAAGGAAACGGCAGGTGATTCTGGGGTTGAAGCGCCGGAGAGTTCTGAGAAGAGGCCGGTGGAGAGTGGTGGAGGTGAGGAACCGCTCAACAAGAAGACGAAGGTGGAGGATGTGGTGCCAAGTGGATTTGGATTGAAGAGAGTGGCGGAGATTGTGTTGGTGTTGTCGACAATGGCGGCGATGAGAGGTGGGAGGGGTCCGACTGATGTTGAGACTAAGTTGATGGTTGAGGCGAGGGAAAAGTTGGTGGATGTGTGTGCAAGGTTGTCGCCCAAGGATATTGTGGCAAGGGAAACTATTGCGACTATAATTGAGAATTTGGGGTTGAATGCCATGATTAAAGATCAGAAATCAGGGAATCGGGTTCCCAAGATGACTATTGCTGAGAGGTTGTCCTTGTCCAAGAAGAAGATGGAAGAAACGAGAAAATTTCTACCTCACCAATCATTGCAGACTGGCTTTAGCGAACCAGTTGATGGCCATGGCCATACAGTAGTTCGTAATTCGTCTGATAAATCAGGCCAAATTCCAGCATCTTCTGTGGGAATTCCGTCTCCTGCACCTGTGATTCATGTCTCTGCAACAACTACTATGCCTTTCCAGCATCAAACACCTACCAATGAGGTGAAGCCACAGATGGTTCCTAACATGATACCTAACAGTCATTTGGTAAGAGATTCATCTTCCATAACACCAGTGAGATTGGAAAGGCCAGTGTTCAAAGTTGAGGGAGTACCGAATGGGTCTTACACTATGCAAATGTCAGCAAATTCTTCTGCTAACCAGCCACTAATTAATGCTCCAATGTGGTCTGTACAAACTCAGTCAGCCTTTTCAGGAAGAAGTGGACCAGAGAATAAGGTGACTGGTCATACCCCTGCCAAGTTTGAGGGAACAGGTGATGGGACTGCATCAAGGATGACATCACAAGTAGCAAGGGATCAGAGCTTTAGACCTTTTATTACCCAGACAGCCTCTGGAAATTTGTCTACCATGCATCAGCCCTTACAGGTCACTAACATCGTTCAAGCTCCTGCACATCCTAACAACCACGCTGAAATTTCTAGGGTTATCCAGAGATTGTTACAACCTAAGGTTCCTGATCATCCCACATGGACTCCTCCATCAAGGGATTACATGAATAAGGCTTTGACTTGCCAATTCTGTAATTTGGCCGTCAATGAGGTGGATAATGTGCTCATCTGTGATAATTGTGAGAAAGGATTTCACTTAATGTGTCTTCAGCCACCAGGTGTGACAGGAGCTCCCAGAGGTGAGTGGCACTGCATCGCATGTTTGTCAAAGAGTAACGGGAAGCCTCTACCTCCAAAATATGGCCGTGTTATGCGATCGGCAATGCCACCAAACACTCCACAAAATGTGGCAACTAATATTGGTGGAACCCAGCAATCTCCAGTGAAGAAGTCAAGCATGTCAGATCCAAATGTCAATCAACAAAGTATAACAACAAATGGAGATGCACCTTTGCAGTCTCTTGCTTCCACTGATGGTGTAGACAGCAGCTGTGTTAGAGTTCCAACTGATGCGAGGATTGAAAATGAAAACCAAACACAGGATAATATGATCTCTTCCTGCACCAAAAATGACGATAAAGATTTGTCTTTCCGGTCGGATTCAAACATCTCAACAAAACTCATTGGTTCTAATTCTAGCTCAGCTGCTATGGATTCTTTGGGTGGAGATTGTGCTGAAGATATACCAAATTCTGAACCACCAGAGAATGAGCAGAGATCTAATATGACAAACTTAGGTGTTTCTAAATCAGAGAGTATGCGCAATAAGACTGAGGCTTTGCAACCTTCTTGCATGTTGCAAACTGTTAGTCAGACAGGGCTGCCCGATGTCTCTGCGGTTTCTTCCAGTAACAATGAGAATGGTTGGAATGATAATAACATAAAGGACTCTCAGAGAAGGGAGAATAAGGAAACTGACTCAGAGGCTACTGAATTAGGGAGAACTTACAATGAGTCTCATGAGTTAAAATCTTCGCACACTTCACAAATTGTGGGTCAGACAGGATCCCCTAATAATTCCGAAGTTCCTTCCAATGACATTGAAAATAGATTGATTGAAAATGATGTGAACGAGTTGCATAGAAGGGAAAACTCTGATCTACCCTTAACATGTGATATTAAGCAAGATATCCAAGATGATTCACCAACTGATGGAATTGAAAATTCTGGAAGTAATGTTGAAGCTAAGCAATTACCTGGCTTTGTTTCAGATGGGCTGCATGTTGAATGGTTTGGTGATGTTATACGTGTTGAGGGCGGAAAAAGATTTTACCATTCTTGTTCAGTGGACGGAGTAATATACAAGCAGCAGGATCATGTTCTATTTCATCTCAGCCAAGGCAAACTGACGCCTTCTAAACTTCAGTGTATGTGGGAAGATAGTAATACTGGTTTGAAGTGGGTTGTTGTGAGAAAGTATTACTTCCCTACTGATTTGCCAAACAACGTTAGCCTACTGTACCCACCTGAAGGCAGTGAGGTCTATGAATCTAATTGTGACTGTACTGCCATGGTTGCTAATTTACGCGGTCCATGTGAAATTCTCCCACCTTCCCAGTTTAGGGAAGAGATTGATAGGCGCAGTCATTTAAGTGTCCTGGAGAATAGTGGAGTAAAGCCACTCTTTCTCTGCAGATTGCAGTATGATGAATCGAAAGGGTTGCTTCAAACTGTTGACAATTAA 2727 0.4371 MTMKETAGDSGVEAPESSEKRPVESGGGEEPLNKKTKVEDVVPSGFGLKRVAEIVLVLSTMAAMRGGRGPTDVETKLMVEAREKLVDVCARLSPKDIVARETIATIIENLGLNAMIKDQKSGNRVPKMTIAERLSLSKKKMEETRKFLPHQSLQTGFSEPVDGHGHTVVRNSSDKSGQIPASSVGIPSPAPVIHVSATTTMPFQHQTPTNEVKPQMVPNMIPNSHLVRDSSSITPVRLERPVFKVEGVPNGSYTMQMSANSSANQPLINAPMWSVQTQSAFSGRSGPENKVTGHTPAKFEGTGDGTASRMTSQVARDQSFRPFITQTASGNLSTMHQPLQVTNIVQAPAHPNNHAEISRVIQRLLQPKVPDHPTWTPPSRDYMNKALTCQFCNLAVNEVDNVLICDNCEKGFHLMCLQPPGVTGAPRGEWHCIACLSKSNGKPLPPKYGRVMRSAMPPNTPQNVATNIGGTQQSPVKKSSMSDPNVNQQSITTNGDAPLQSLASTDGVDSSCVRVPTDARIENENQTQDNMISSCTKNDDKDLSFRSDSNISTKLIGSNSSSAAMDSLGGDCAEDIPNSEPPENEQRSNMTNLGVSKSESMRNKTEALQPSCMLQTVSQTGLPDVSAVSSSNNENGWNDNNIKDSQRRENKETDSEATELGRTYNESHELKSSHTSQIVGQTGSPNNSEVPSNDIENRLIENDVNELHRRENSDLPLTCDIKQDIQDDSPTDGIENSGSNVEAKQLPGFVSDGLHVEWFGDVIRVEGGKRFYHSCSVDGVIYKQQDHVLFHLSQGKLTPSKLQCMWEDSNTGLKWVVVRKYYFPTDLPNNVSLLYPPEGSEVYESNCDCTAMVANLRGPCEILPPSQFREEIDRRSHLSVLENSGVKPLFLCRLQYDESKGLLQTVDN* 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00019 908 MobiDBLite consensus disorder prediction 520 534 - -
Pte4g00019 908 ProSiteProfiles BAH domain profile. 780 907 IPR001025 GO:0003682
Pte4g00019 908 MobiDBLite consensus disorder prediction 14 36 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 582 607 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 623 693 - -
Pte4g00019 908 SUPERFAMILY FYVE/PHD zinc finger 379 446 IPR011011 -
Pte4g00019 908 Gene3D - 753 908 IPR043151 -
Pte4g00019 908 ProSitePatterns Zinc finger PHD-type signature. 389 435 IPR019786 -
Pte4g00019 908 MobiDBLite consensus disorder prediction 456 511 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 1 36 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 456 607 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 670 693 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 623 640 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 641 669 - -
Pte4g00019 908 ProSiteProfiles Zinc finger PHD-type profile. 386 438 IPR019787 -
Pte4g00019 908 Pfam PHD-finger 389 437 IPR019787 -
Pte4g00019 908 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 452 IPR013083 -
Pte4g00019 908 MobiDBLite consensus disorder prediction 153 188 - -
Pte4g00019 908 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 10 906 - -
Pte4g00019 908 SMART PHD_3 388 436 IPR001965 -
Pte4g00019 908 MobiDBLite consensus disorder prediction 548 566 - -
Pte4g00019 908 MobiDBLite consensus disorder prediction 280 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00019 Pte-Chr4 403634 409681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00019 392 456 Core DNA Replication Machinery Family AT4G12620 37.333 2.85e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pte4g00019 PHD 2.5e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00019 - - cave:132174879 695.656