Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00011 ATGCCCGAGAGAAAAACTGATGGCAGCGTTCTACAGCAACCTCGTACTGTGGTAAGGAAATTCTTGGCTAGACCTCAACATGAAGGCGTCGGTGCCATTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTATTTTGATCCTTTCCTTGCTTTGGATGAATTCTCAGTGACCGCTCCAGCTGGTTTTCCAGATCATCCTCACAGAGGGTTTGAGACTGTTACGTACATGTTACAGGGATCTGTGACACATGAAGACTTTGAAGGGCACAAGGGCACAATAGGAACGGGTGATCTGCAGTGGATGACTGCAGGGCGAGGGATAGTTCACTCAGAGATGCCTGCAGCCCAGGGTACCCAAAAGGGTCTCCAATTGTGGATCAACCTATCTTCCAAATATAAAATGATTGAACCAAATTATCAAGAAATTTTGAGCAAGGATATTGCAGAAGCTGTGAAAGATGGGGTCAAGGTTAGAGTGATAGCAGGTGAAGCATTGGGGAAAAGCTCAACCATCTACACAAGGACTCCAACCATGTATCTGGACTTCACAATGAAACCGGGAGCCTCACTTGAACAACCAATACCCATGTCTTGGAATGCCTTTGCCTACGTGTTAGAGGGGGAAGGTGTGTTTGGCAATGCGAAGTCTCAGCCTGTGACTCCTCACCATCTTCTGCTTCTTGGCCCAGGTGATGGTTTGGCTGCATGGAACAAGTCCTCTAAGTTACTTAGGTTTATTTTAGTAGGAGGGGAACCACTAGGTGAACCTGTCGTGCAATATGGACCTTTTGTAATGAACACTCAGGAAGAGATGGATCAGACCATGGATGATTTTGAAAATTGTGTCAATGGGTTTGAGAAAGCCAAGCATTGGAGATCTAGCTCTGCAGTGGCCCTTGATTTTTAG 909 0.4598 MPERKTDGSVLQQPRTVVRKFLARPQHEGVGAIVRRSIGRFELKYFDPFLALDEFSVTAPAGFPDHPHRGFETVTYMLQGSVTHEDFEGHKGTIGTGDLQWMTAGRGIVHSEMPAAQGTQKGLQLWINLSSKYKMIEPNYQEILSKDIAEAVKDGVKVRVIAGEALGKSSTIYTRTPTMYLDFTMKPGASLEQPIPMSWNAFAYVLEGEGVFGNAKSQPVTPHHLLLLGPGDGLAAWNKSSKLLRFILVGGEPLGEPVVQYGPFVMNTQEEMDQTMDDFENCVNGFEKAKHWRSSSAVALDF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00011 302 Gene3D Jelly Rolls 28 280 IPR014710 -
Pte4g00011 302 CDD cupin_pirin_N 34 129 - -
Pte4g00011 302 Pfam Pirin C-terminal cupin domain 180 284 IPR008778 -
Pte4g00011 302 PANTHER PIRIN-RELATED 9 296 IPR012093 -
Pte4g00011 302 CDD cupin_pirin_C 177 253 - -
Pte4g00011 302 Gene3D Jelly Rolls 149 254 IPR014710 -
Pte4g00011 302 Pfam Pirin 35 127 IPR003829 -
Pte4g00011 302 PIRSF Pirin 13 293 IPR012093 -
Pte4g00011 302 FunFam pirin 28 173 - -
Pte4g00011 302 SUPERFAMILY RmlC-like cupins 15 294 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00011 Pte-Chr4 310842 313810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00011 14 290 Calmodulin-binding Proteins AT3G59220 58.423 3.40e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00011 K06911 - qsa:O6P43_013624 530.02