Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte4g00008 ATGGAATCAGATCTTGGTAAACTCTTCATTGGTGGGATTTCATGGGACACAGATGAGGAACGGCTTAAAGAGTATTTTCGGAAATACGGGGAGGTGATAGAAGCTGTGATTATGAGAGATCGGACAACTGGTCGTGCTCGTGGCTTTGGTTTTGTTGTCTTTGCTGATCCTGGTGTTGCAGAAAGAGTCATCATGGACAAGCACATGATTGATGGCCGTACTGTGGAAGCAAAGAAAGCTGTTCCCAGAGATGATCAACACTCTTTAAATAGAAACACTTCTAGTGTTCATGGTTCTCCTGGTCCTGGACGAACAAAAAAGATTTTTGTTGGAGGTTTACCATCAACTATAACAGAGAGTGACTTTAAGAAGTACTTTGATCAATTTCATACAATTAATTATGATCATAACACCTAG 417 0.4053 MESDLGKLFIGGISWDTDEERLKEYFRKYGEVIEAVIMRDRTTGRARGFGFVVFADPGVAERVIMDKHMIDGRTVEAKKAVPRDDQHSLNRNTSSVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFHTINYDHNT* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte4g00008 138 Gene3D - 6 88 IPR012677 -
Pte4g00008 138 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 137 - -
Pte4g00008 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pte4g00008 138 Gene3D - 102 137 IPR012677 -
Pte4g00008 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pte4g00008 138 SUPERFAMILY RNA-binding domain, RBD 6 133 IPR035979 GO:0003676
Pte4g00008 138 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pte4g00008 138 MobiDBLite consensus disorder prediction 80 105 - -
Pte4g00008 138 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte4g00008 Pte-Chr4 303438 304152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte4g00008 8 54 C2H2 Transcription Factor Family AT2G19380 46.809 9.45e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte4g00008 K14411 - vvi:100267443 261.536