Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02468 ATGATGCAGACTGAGCTTCTTCAGGCCTCATGGCCATTCTATGAAATCGTTAATTCAGCCTTTGGTCATATTGAGCAATATGGTCTTAACATGGAAAATCATATGGGGGGCTGTAATCAATTACCTTCCATGTTCATACCCAAGGAGGAAGCAATCTCTCAAGGTTCAACAATCTCTTTTAATTCAAACTTGTATCTCAGTCACTACTCACTTGATTTTGATCCTCCTCACCTTCCATCACTGGAGGAAGATTTCTCAATGGAGTTGGAAGAATTTGAGCCTGTTTTCAGCGATGAGATCAATGGTGCTTATCATCATCATCTCAAGGGTCTGCATGAGAGTGAGGAAAGTTTTCCTTCTCCTCAGCTCTACAATCAAGGAGAAGAGGCTGGCAGGAGTCCTAGCTCCTCCACGATATCAGACCATTCCTGTGTATCTTCTGTTAGATCTTCACTGGTGTTGCCAAAGGAAGACATGGAAATTGACAACCACTTGAGTATTCTTCACTTGCTCGAAGCTTATGGAGAGGCAGTAGAGAAGCAGCACAAAGAGCTTGCAGAAGTAATCTTGAGGTGCATATCTCAGAAAGGTAGTCCCCTTGGAGAAACGTTGGAGCGCGTTTCATTTAATCTGTCTCAAGAAATTGATAATGAAGGAGATTATTTGAGACAAGAGGCAATAAAAAATTTCAAAGATGCATTCAAGGTATTCTATCAAATATTCCCCCATGGGAGGTTTGCTCACTTCACTGCAAATGCAGCTATTTTTGAATCTATTCCAGATGATGTAGAGCTTATACACTTGGTGGACTTTGACATGGGAGAAGGGGTTCAATGGCCTCCAATGATTGAGGCCATTGCGCAGCGAGGGAAACTGACGCTGAAATTGACTTCGATTAAATGGGGGGAGGGTAGTTTTTACTACAGTCCTTTCATGTGTAAATTTGATGAGACTGAGAGGCGGCTCACAGAGCTTGCCTCAAACTTCGGCATTAAATTAATAATGGAAGAAAGTGGAATAGAAAAAGTGGCAGCTGAGCTGAAGAAACAGAAGACAAAAGCTGCAGAGAAAGAATGGTTGGTATTTAATTGCATGGTGTCTCTTCCACACATGGGAAGGCAAAGAAGTAGAAGACATGTCATGGAGTTTCTGAACTTGGCTAATGAATGTCTGCAGAGTTCTTCAAATGATGCAGGTCAAATTTCAAAAGGCATGATAGCATTTGGTGATGGAGATGCATATGAGCATCACGAGAATTGTTCAAGTTTTGCAACATATTTCAATGGCCATGTATTGCATTACCAAGCATTGTTAGAGTCCATTGAATCCAATTTGCCTGAAAATTTAGCAGAAGCAAGAACAACTATAGAAAATCTCTTTGTGGCACCTTATATTAGCTCTCTTGCTTGGTCACAAAAGTGGGAAGACGTGAGACAAGGTTGTCATCTTGTTCATGGAGGTATTGGATTGGAGGGCCGTATGCTCAGCATAGAAATGTTAATGGAATTGAAAGAAATGGTGAAGCAACTACAGAGTTCATATGGGGTAAGAGTTGAAGAAGAGAATGGCAATGAAATTGTCTTGGAATGGAAGAAAACTCCATTAGTGAGAGTTTCAATTTGGTGA 1626 0.4102 MMQTELLQASWPFYEIVNSAFGHIEQYGLNMENHMGGCNQLPSMFIPKEEAISQGSTISFNSNLYLSHYSLDFDPPHLPSLEEDFSMELEEFEPVFSDEINGAYHHHLKGLHESEESFPSPQLYNQGEEAGRSPSSSTISDHSCVSSVRSSLVLPKEDMEIDNHLSILHLLEAYGEAVEKQHKELAEVILRCISQKGSPLGETLERVSFNLSQEIDNEGDYLRQEAIKNFKDAFKVFYQIFPHGRFAHFTANAAIFESIPDDVELIHLVDFDMGEGVQWPPMIEAIAQRGKLTLKLTSIKWGEGSFYYSPFMCKFDETERRLTELASNFGIKLIMEESGIEKVAAELKKQKTKAAEKEWLVFNCMVSLPHMGRQRSRRHVMEFLNLANECLQSSSNDAGQISKGMIAFGDGDAYEHHENCSSFATYFNGHVLHYQALLESIESNLPENLAEARTTIENLFVAPYISSLAWSQKWEDVRQGCHLVHGGIGLEGRMLSIEMLMELKEMVKQLQSSYGVRVEEENGNEIVLEWKKTPLVRVSIW* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02468 541 ProSiteProfiles GRAS family profile. 158 541 IPR005202 -
Pte3g02468 541 MobiDBLite consensus disorder prediction 115 142 - -
Pte3g02468 541 Pfam GRAS domain family 168 541 IPR005202 -
Pte3g02468 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 138 532 IPR005202 -
Pte3g02468 541 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02468 Pte-Chr3 45363171 45364796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02468 116 331 GRAS Transcription Factor Family AT1G66350 27.477 1.28e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Pte3g02468 GRAS 3.8e-42 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02468 - - qsa:O6P43_016560 533.487