Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02458 ATGAAACTAGTATTTGATCTTGAAGTAGAGGCCTTTGCAGAAAATGAATCTGAAGTCAGTAGCCAAGTTGCTTCCAACTTATCTGCTCAAGACATATCTACAGTACCCTCAAGTGAAACCCTTACTAATTCTTTCAGTCTTAGGAATCATAATGGGGCTCAACTGAACACCGAGCTAGTGTCACTTGACTTAACTCTACAGCGATGTGAGAGTAGCAACGACCCTGTAGCTCAAACTACTTCTTTGACTGTCCCTCGAGTTTTCTCCTGCAACTACTGTCAGCGCAAATTTTACAGCTCACAGGCCCTTGGTGGTCACCAGAATGCACATAAATGA 336 0.4286 MKLVFDLEVEAFAENESEVSSQVASNLSAQDISTVPSSETLTNSFSLRNHNGAQLNTELVSLDLTLQRCESSNDPVAQTTSLTVPRVFSCNYCQRKFYSSQALGGHQNAHK* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02458 111 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 111 IPR044246 GO:0009788
Pte3g02458 111 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Pte3g02458 111 SUPERFAMILY beta-beta-alpha zinc fingers 86 110 IPR036236 -
Pte3g02458 111 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 111 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02458 Pte-Chr3 45172853 45173237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02458 60 111 C2H2 Transcription Factor Family AT1G24625 67.308 2.99e-17 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g02458 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02458 - - pop:18106596 134.42