Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02447 ATGGAAATGACGTCTAGTCCTCGCTCAGTGGAAGAAATTTTCAAGGATTACAGTGCACGGAGAGCTGGTATTATTCGTGCTTTAACTCAAGATGTGGATGAATTTTATGGAATCTGTGATCCGGAAAAGGAGAATTTATGCCTCTATGGACACCCAAATGAAAGCTGGGAAGTGAATCTGCCAGCTGAAGAAGTTCCACCTGAACTTCCTGAACCTGCTTTAGGAATAAACTTCGCTAGGGATGGGATGAACAGAAGGGACTGGCTTTCCTTGGTTGCTGTGCATAGTGATTGTTGGTTGCTTTCTGTGGCTTTCTATCTTGGAGCCAGGCTTAACAGAAATGAAAGAAAACGCCTGTTTAGCATGATCAATGATCTTCCTACAGTCTTTGAATTTGTGACAGAGAGGAAACCAGTAAAAGACAAGCCCGCCGTAGACAATGGAAGCAAATCCCGCGGCAGCACCAAGAGGTCCAGTGATGGAGAAGTTAAAAGCAACCCGAAACCTGCAGAAGAATGTTTTGAAGAGGACGATGATGAACACAATGAAACCTTCTGTGGAAGCTGTGGTGGAAGCTACAGTGCTGATGAATTTTGGATTGGCTGTGACATCTGTGAGAAATGGTTTCATGGGAAATGTGTAAAGATTACACCTGCAAAGGCTGAAAGCATCAAGCAATACAAATGCCCCTCATGTAGCTTCAAACGGGGCAGGAGTTAA 720 0.4417 MEMTSSPRSVEEIFKDYSARRAGIIRALTQDVDEFYGICDPEKENLCLYGHPNESWEVNLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDCWLLSVAFYLGARLNRNERKRLFSMINDLPTVFEFVTERKPVKDKPAVDNGSKSRGSTKRSSDGEVKSNPKPAEECFEEDDDEHNETFCGSCGGSYSADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSFKRGRS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02447 239 CDD PHD_AL_plant 185 235 IPR044104 -
Pte3g02447 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Pte3g02447 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Pte3g02447 239 MobiDBLite consensus disorder prediction 140 176 - -
Pte3g02447 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Pte3g02447 239 MobiDBLite consensus disorder prediction 140 171 - -
Pte3g02447 239 Pfam PHD-finger 185 234 IPR019787 -
Pte3g02447 239 SUPERFAMILY FYVE/PHD zinc finger 175 236 IPR011011 -
Pte3g02447 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Pte3g02447 239 SMART PHD_3 185 233 IPR001965 -
Pte3g02447 239 FunFam PHD finger alfin-like protein 178 234 - -
Pte3g02447 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02447 Pte-Chr3 44880389 44883312 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02447 4 240 Alfin-like Transcription Factor Family AT5G05610 75.630 2.78e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte3g02447 Alfin 1.3e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02447 K26274 - qsa:O6P43_026231 449.899