LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g02438	ATGGTGCTTGGCTGGATAAGAAAGAAGAGCAACCACAGAAATTTGGTGAAACCTGACATGGAGATAGTGGTACCAAATCATTTCAGGTGTCCTATATCTCTTGATCTTATGAAAGATCCTGTCACATTGTCAACCGGGCAAACATACGATCGTGAAAGCATTGAGAGGTGGTTTGAGGAGGGGAATTATACATGTCCGGTTACGAATCAGATTGTTAGGGACTTTGATCAGATTCCTAATCATACCCTTCGGATGATGATTCAAGATTGGTGTGTGCAGAATCAACAGTTCGGTGTCGAAAGGATACCTACACCGAGAATTCCGATCTCGTCTATGGAGGTGCATGAGCTTCTTGAACTTGTGAAGGACTCTGCTCGGCGGGGCGATCAGTATGGATGCCTGGAATGTGTGCAGAAGATGGAGAGATGGGGTGGTGAGAGTGAAAGAAACAAGAGGTGTATTGTAGACAATGGAGCTGCTAGTGTCTTTGCAGCTGCGTTCGACGCTTTTGCCGTTGGTTGGGTTGAGAAAGATGCTGTTCTGGAGGCAATTCTGTCTGCTTTGAATTGGATGTTCCCACTCACCCCGGAAGCTCAGAGATTTTTGGGATCAAATGATTCAATACGTTGCATGGTCTGGTTTTTGAAGCACCAAGATGTTTCTAGAAAGCAAAAATCGATTCTCGTATTGAGAGAAGTGCTTTCTTACGGTGATCAGGGGCACTTGGAGAATCTGGCAACCATGGACGGAGTCAGTGAGTTACTGCTGGGGTTTATCAACAAAAGGATATGTCCAACGCCAACCCTTACAAAAGCTTCATTGGATATTGTTCAATACATGGTCTCATCATCTTTTCCTGCATCCGAGAAAACAAAATTGTCATTTGTCCAATTGGGCATCATCTCCTCACTTCTTGAGATTCTCGTGGACTCGGATAAAATCATTTGTGAGAGAGCATTGGGTGTGTTTGATTCACTTTGCAGCTGTGAAGCAGGAAGAGAAAAGGCCTATGCCAATGCTCTGACTATACCAGTCTTGGTGAAGAAGATCTTAAGGGTATCCGAACTGGCAACGGAATTTTCGGTTTCTGCAATATGGAAGCTTGTCAAGAATGGAGGGAAGGTAGATGAGAGAGTCATGGTAGAGGCACTTCAAGTGGGTGCCTTTCAGAAGCTCCTGTTGATATTGCAGATTGGTGGCTGTGATGAGACAAAGGAGAAAATAACTGAGCTTCTTAAACTGCTGAATCATTACAGGGCAGGTTTGGAATGCATAGAATCGGTGGATTTCAAAAATCTCAAGAGGTCATTTTGA	1314	0.4414	MVLGWIRKKSNHRNLVKPDMEIVVPNHFRCPISLDLMKDPVTLSTGQTYDRESIERWFEEGNYTCPVTNQIVRDFDQIPNHTLRMMIQDWCVQNQQFGVERIPTPRIPISSMEVHELLELVKDSARRGDQYGCLECVQKMERWGGESERNKRCIVDNGAASVFAAAFDAFAVGWVEKDAVLEAILSALNWMFPLTPEAQRFLGSNDSIRCMVWFLKHQDVSRKQKSILVLREVLSYGDQGHLENLATMDGVSELLLGFINKRICPTPTLTKASLDIVQYMVSSSFPASEKTKLSFVQLGIISSLLEILVDSDKIICERALGVFDSLCSCEAGREKAYANALTIPVLVKKILRVSELATEFSVSAIWKLVKNGGKVDERVMVEALQVGAFQKLLLILQIGGCDETKEKITELLKLLNHYRAGLECIESVDFKNLKRSF*	438

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g02438	437	PANTHER	WDSAM1 PROTEIN	21	425	IPR045185	GO:0061630
	Pte3g02438	437	SMART	Ubox_2	27	90	IPR003613	GO:0004842\|GO:0016567
	Pte3g02438	437	FunFam	RING-type E3 ubiquitin transferase	24	96	-	-
	Pte3g02438	437	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	6	101	IPR013083	-
	Pte3g02438	437	Pfam	U-box domain	24	95	IPR003613	GO:0004842\|GO:0016567
	Pte3g02438	437	Gene3D	-	112	416	IPR011989	-
	Pte3g02438	437	ProSiteProfiles	U-box domain profile.	23	97	IPR003613	GO:0004842\|GO:0016567
	Pte3g02438	437	SUPERFAMILY	ARM repeat	117	417	IPR016024	-
	Pte3g02438	437	CDD	RING-Ubox_PUB	25	76	IPR045210	-
	Pte3g02438	437	SUPERFAMILY	RING/U-box	21	100	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g02438	Pte-Chr3	44841340	44843044	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g02438	7	438	U-box Gene Family	AT5G37490	41.855	4.79e-114	340

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g02438	-		-	qsa:O6P43_008457	597.816

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