Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02438 ATGGTGCTTGGCTGGATAAGAAAGAAGAGCAACCACAGAAATTTGGTGAAACCTGACATGGAGATAGTGGTACCAAATCATTTCAGGTGTCCTATATCTCTTGATCTTATGAAAGATCCTGTCACATTGTCAACCGGGCAAACATACGATCGTGAAAGCATTGAGAGGTGGTTTGAGGAGGGGAATTATACATGTCCGGTTACGAATCAGATTGTTAGGGACTTTGATCAGATTCCTAATCATACCCTTCGGATGATGATTCAAGATTGGTGTGTGCAGAATCAACAGTTCGGTGTCGAAAGGATACCTACACCGAGAATTCCGATCTCGTCTATGGAGGTGCATGAGCTTCTTGAACTTGTGAAGGACTCTGCTCGGCGGGGCGATCAGTATGGATGCCTGGAATGTGTGCAGAAGATGGAGAGATGGGGTGGTGAGAGTGAAAGAAACAAGAGGTGTATTGTAGACAATGGAGCTGCTAGTGTCTTTGCAGCTGCGTTCGACGCTTTTGCCGTTGGTTGGGTTGAGAAAGATGCTGTTCTGGAGGCAATTCTGTCTGCTTTGAATTGGATGTTCCCACTCACCCCGGAAGCTCAGAGATTTTTGGGATCAAATGATTCAATACGTTGCATGGTCTGGTTTTTGAAGCACCAAGATGTTTCTAGAAAGCAAAAATCGATTCTCGTATTGAGAGAAGTGCTTTCTTACGGTGATCAGGGGCACTTGGAGAATCTGGCAACCATGGACGGAGTCAGTGAGTTACTGCTGGGGTTTATCAACAAAAGGATATGTCCAACGCCAACCCTTACAAAAGCTTCATTGGATATTGTTCAATACATGGTCTCATCATCTTTTCCTGCATCCGAGAAAACAAAATTGTCATTTGTCCAATTGGGCATCATCTCCTCACTTCTTGAGATTCTCGTGGACTCGGATAAAATCATTTGTGAGAGAGCATTGGGTGTGTTTGATTCACTTTGCAGCTGTGAAGCAGGAAGAGAAAAGGCCTATGCCAATGCTCTGACTATACCAGTCTTGGTGAAGAAGATCTTAAGGGTATCCGAACTGGCAACGGAATTTTCGGTTTCTGCAATATGGAAGCTTGTCAAGAATGGAGGGAAGGTAGATGAGAGAGTCATGGTAGAGGCACTTCAAGTGGGTGCCTTTCAGAAGCTCCTGTTGATATTGCAGATTGGTGGCTGTGATGAGACAAAGGAGAAAATAACTGAGCTTCTTAAACTGCTGAATCATTACAGGGCAGGTTTGGAATGCATAGAATCGGTGGATTTCAAAAATCTCAAGAGGTCATTTTGA 1314 0.4414 MVLGWIRKKSNHRNLVKPDMEIVVPNHFRCPISLDLMKDPVTLSTGQTYDRESIERWFEEGNYTCPVTNQIVRDFDQIPNHTLRMMIQDWCVQNQQFGVERIPTPRIPISSMEVHELLELVKDSARRGDQYGCLECVQKMERWGGESERNKRCIVDNGAASVFAAAFDAFAVGWVEKDAVLEAILSALNWMFPLTPEAQRFLGSNDSIRCMVWFLKHQDVSRKQKSILVLREVLSYGDQGHLENLATMDGVSELLLGFINKRICPTPTLTKASLDIVQYMVSSSFPASEKTKLSFVQLGIISSLLEILVDSDKIICERALGVFDSLCSCEAGREKAYANALTIPVLVKKILRVSELATEFSVSAIWKLVKNGGKVDERVMVEALQVGAFQKLLLILQIGGCDETKEKITELLKLLNHYRAGLECIESVDFKNLKRSF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02438 437 PANTHER WDSAM1 PROTEIN 21 425 IPR045185 GO:0061630
Pte3g02438 437 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Pte3g02438 437 FunFam RING-type E3 ubiquitin transferase 24 96 - -
Pte3g02438 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 101 IPR013083 -
Pte3g02438 437 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Pte3g02438 437 Gene3D - 112 416 IPR011989 -
Pte3g02438 437 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
Pte3g02438 437 SUPERFAMILY ARM repeat 117 417 IPR016024 -
Pte3g02438 437 CDD RING-Ubox_PUB 25 76 IPR045210 -
Pte3g02438 437 SUPERFAMILY RING/U-box 21 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02438 Pte-Chr3 44841340 44843044 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02438 7 438 U-box Gene Family AT5G37490 41.855 4.79e-114 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02438 - - qsa:O6P43_008457 597.816