Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g02402 | ATGTCGACCATACAGATGTCTCACATAGATTTAGAGCAAGGTAGTCATAGAAGGTCTGTTGCTGGGAGTGAAATGAGTGGTGAGGGAAGTGTATGTTTTTCTGATGCTGAAGATGGTTCTTGTTACTCTCATTTCTACTCAACACATGGTGGGTCATACGATGACTATAGTTTTGACTGTGTAACTGATGCTGAGGTTGGAGATGTTCCAGATGCCAGCAGAAGAGTTTCTTCTGTTACAGATCGTTCTGTGGAGGTTGAAATAGAAAGTGGGGTTCCTGAAATAAAGGTGCATTTGTCTAAAATTGAAAGAGATTGTAGGATTTGTCAAATGGGTTTAGAGAGTGACAGTCATGAATCTGGAATGCCTATTGAACTTGGTTGTTTATGTAAGGACGACTTAGCTGCTGCGCACAAGCATTGTGCAGAGGCCTGGTTCAAAATTAAAGGAAATAGGACCTGCGAAATTTGTCATTCTGTAGCGCGAAATGTTTTTGGAACTAGTGAGGAGTCTTCAGAGAATTCAAATGAGAGTGACAACAATGCTGCAGTATTATCTGCAGTACCAACATCTTCTTCTACTTCAACAGAGACTCGAAGCTTCTGGCAAGGGCATCGATTCCTGAATTTTCTGCTCGCATGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCATTTTAATGTGCCATCATCGTAA | 699 | 0.4092 | MSTIQMSHIDLEQGSHRRSVAGSEMSGEGSVCFSDAEDGSCYSHFYSTHGGSYDDYSFDCVTDAEVGDVPDASRRVSSVTDRSVEVEIESGVPEIKVHLSKIERDCRICQMGLESDSHESGMPIELGCLCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVFGTSEESSENSNESDNNAAVLSAVPTSSSTSTETRSFWQGHRFLNFLLACMVFAFVISWLFHFNVPSS* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g02402 | 232 | SMART | ringv_2 | 105 | 158 | IPR011016 | GO:0008270 | |
| Pte3g02402 | 232 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 98 | 164 | IPR011016 | GO:0008270 | |
| Pte3g02402 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 169 | IPR013083 | - | |
| Pte3g02402 | 232 | PANTHER | ZINC FINGER, RING-CH-TYPE | 13 | 231 | - | - | |
| Pte3g02402 | 232 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Pte3g02402 | 232 | SUPERFAMILY | RING/U-box | 103 | 161 | - | - | |
| Pte3g02402 | 232 | Pfam | RING-variant domain | 106 | 157 | IPR011016 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g02402 | Pte-Chr3 | 44091283 | 44094037 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g02402 | 69 | 233 | C3H Transcription Factor Family | AT5G05830 | 63.636 | 1.32e-68 | 208 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g02402 | - | - | gmx:100808666 | 347.436 |