LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g02397	ATGGGAGTCATAAAGACAATCATACATGAAGGGGAGGGTTGGGAATCTCCTAGGGAACCTTATGAAGTGAAGGCTTGGATTTCTGCAAAGACAGGTTCCGGAAAATTGATTATCTCACATACCAAAGAAGAACCGTATTTCTTTACCTTTGGAAAATCAGAGGTACCTAAAGGTCTTGAAATGGGAATTGGGACAATGTCTCGGCATGAAAAAGCCATAATATATGTCACCAGCCAGTACTTAAGTGAGTCTCCTCTCATGTCCCTAGAAGAAGGATATGAAGAAATTCAGTTCGAAGTAGAACTTGTGCACTTCATTCAGGTAAGGGACATGCTCGGAGATGGCAGACTGATGAAACGCAGAATTCGTGATGGGAAAGGTGAGTTTCCAATGGATTGCCCTCTGCATGACAGTCTTCTACGTGTTCATTACAAGGGAATGCTGCTCAATGAAGAAAAGACAGTCTTCTACGACACAAGAGTCGATAATGATGGTCAGCCGTTGGAGTTCAGTTCAGGAGAAGGATGTGTACCTGAGGGATTTGAAATGAGTGTTCGTCTGATGCTCCCTGAAGAGATAGCTCTAGTGACCTGCCCTCCTGATTATGCTTATGACAAATTCCCTAGACCAGAAAATGTTCCTGAAGGTGCTCATATTCAATGGGAAATTGAGCTTCTTGGTTTCGAAATGCCAAAGGATTGGACTGGGCTCAACTTCAAAAGTATAATGAATGAAGCAGAAAAGATCAGAATCACGGGAAACAGGCTTTTCAAGGAAGGGAAATTTGAACTTGCTAAGGCCAAATATGAGAAGGTACTTCGGGAATTTAATCATGTTAATCCCCAGGACGATGAGGAAGGAAAGGAATTCTCAGATACTCGTAATTTGTTACATTTGAATGTTGCTGCGTGCTACCTTAAGTTGGGGGAGTGCAGAAAGTCTATCGAAACATGCAATAAGGTTTTGGAAGCAAACCCTGCACATGTAAAAGGTCTTTATCGCCGTGGATTGGCCTACATGACTGCTGGAGATTTTCAGGAAGCGCGAGATGATTTCAAAATGATGATAAAAGTTGACAAGTCAACTGAATCTGACGCAACAGCAGCTCTGCAAAAATTAAAGCAGAAGGAGCAGGAAGTTGAAAAGAAGGCTAGAAAACAATTTAAAGGACTCTTCGACAAGAAACCTGGAGAAATTGCAGAAGCCAGAGCTGAGGATACTGGAGGGGATGAATGCACAGGTTTGTTGAAGGAAAATAGAGAAGATGACCTGGACGAAACAAGTTCAGAGAGATCTCATGAAGCTGCTCCTGATGATCATAGGAGGAGTTGGTTCACTCTACTTTGGCCTTCTGGTACAAGATTATTTTCAGCTCTTGGATTAAACAGATGTTCCATATTATAG	1404	0.4217	MGVIKTIIHEGEGWESPREPYEVKAWISAKTGSGKLIISHTKEEPYFFTFGKSEVPKGLEMGIGTMSRHEKAIIYVTSQYLSESPLMSLEEGYEEIQFEVELVHFIQVRDMLGDGRLMKRRIRDGKGEFPMDCPLHDSLLRVHYKGMLLNEEKTVFYDTRVDNDGQPLEFSSGEGCVPEGFEMSVRLMLPEEIALVTCPPDYAYDKFPRPENVPEGAHIQWEIELLGFEMPKDWTGLNFKSIMNEAEKIRITGNRLFKEGKFELAKAKYEKVLREFNHVNPQDDEEGKEFSDTRNLLHLNVAACYLKLGECRKSIETCNKVLEANPAHVKGLYRRGLAYMTAGDFQEARDDFKMMIKVDKSTESDATAALQKLKQKEQEVEKKARKQFKGLFDKKPGEIAEARAEDTGGDECTGLLKENREDDLDETSSERSHEAAPDDHRRSWFTLLWPSGTRLFSALGLNRCSIL*	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g02397	467	FunFam	Peptidylprolyl isomerase	234	390	-	-
	Pte3g02397	467	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	21	103	IPR001179	GO:0003755
	Pte3g02397	467	Pfam	FKBP-type peptidyl-prolyl cis-trans isomerase	138	226	IPR001179	GO:0003755
	Pte3g02397	467	Coils	Coil	363	386	-	-
	Pte3g02397	467	SMART	tpr_5	329	362	IPR019734	GO:0005515
	Pte3g02397	467	SMART	tpr_5	295	328	IPR019734	GO:0005515
	Pte3g02397	467	SMART	tpr_5	246	279	IPR019734	GO:0005515
	Pte3g02397	467	MobiDBLite	consensus disorder prediction	399	437	-	-
	Pte3g02397	467	Gene3D	Tetratricopeptide repeat domain	240	394	IPR011990	GO:0005515
	Pte3g02397	467	SUPERFAMILY	FKBP-like	2	105	-	-
	Pte3g02397	467	Gene3D	-	1	108	IPR046357	GO:0003755
	Pte3g02397	467	SUPERFAMILY	FKBP-like	93	228	-	-
	Pte3g02397	467	FunFam	Peptidylprolyl isomerase	107	231	-	-
	Pte3g02397	467	Gene3D	-	109	235	IPR046357	GO:0003755
	Pte3g02397	467	FunFam	Peptidylprolyl isomerase	1	106	-	-
	Pte3g02397	467	ProSiteProfiles	TPR repeat profile.	329	362	IPR019734	GO:0005515
	Pte3g02397	467	SUPERFAMILY	TPR-like	243	385	IPR011990	GO:0005515
	Pte3g02397	467	ProSiteProfiles	FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.	137	229	IPR001179	GO:0003755
	Pte3g02397	467	PANTHER	PEPTIDYLPROLYL ISOMERASE	107	407	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g02397	Pte-Chr3	44052028	44059394	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g02397	2	394	Calmodulin-binding Proteins	AT5G48570	29.280	2.16e-42	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g02397	-		-	qsa:O6P43_016692	784.637