Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02388 ATGGCGGAAGGGGTTGAAGCTTTTCATGTCCCACAACAAAGCAGAAGGGATAAGCTAAGAGTTTTAGGAGGAGGTGCAGGTCAAACTCAACAACAGGGTTCTCCTCTTACTCAACCTTCTTCAAACCACCACCTTCAAGTCTGTAGTACTAGTTTGCTTCCTCTGTATGACCCTACCTTCGTCTCAAATTCCAATTTTCCTGGTCATAATTTTCATGGAGAAATGGTATCTGTCACAGAAGAAAGTTGTAAAGGACAGCCGACAGGTTGTTCATCGAAGGTAGAAGGTGGAGGTCATAATTTGATGGGGTTTGTAGGTGGAACTGTTCACACTGGTTCATCATCATCTTCTTCTATTTCTCATCATCCGTATTTGGATCCGGACACTTCTTTGCCCATAAACCCCGGTTTAATTCAAGTCTTGAATAGTAACCCTTTTCTTTATACCTCGCATAACCTTCGAGAATTTCATGAGCAGAGCTATAATGGTGATGAAGTGATGCTGTATAAGCCGGAGCCCTTGTCTTTGTCTTTGTCATCTCAAAATACCCACCATCGATATCTCCCACTTGAACTTAATCCTCAAAGATATGGCTCTACCATTTATGGGGATAAGGCTAACGATGGAGGGTACGGAATTCCAGGCTTATATGTCGGTCCAAGCGCTGATTCTGCGTCAAATGAAGTATCAAGAAGCTCTGTACCGCTTGGTCCACTTACAGGCTATGCATCGATTTTGAAACAATCGACATTCTTGAAGCCTGCGCAGCAGTTACTGGAGGAACTTTGTTACATTGGAGGCAATGGAATTTACTCCGAGAAGTTAACTGCTGACGTGTCGCTAATGGAGCCTCCTCCTCGCACTGATAGTTTAGATTCTGCCGTTGAGGCCGCCGACGATCCCCTTGGTTGTAGAGACGGTGGTGAGGCTCGGAGGAAGAAGTCCAGGCTTTTAACAATGCTTGATGAGATCTACAGGAAATACAAGCAGTATTATCAACAGATGCAGGCTGTGGTAACTTCATTTGAGTGTGTTGCTGGCCTAGGTAATGCAGCTCCATACGCAAACTTGGCTGTAAAAGCCATGTCCAGACATTTCAGGTGTTTGAAGGATGTAATCAGTGACCAGCTTCAGTTTACCAACAAGTCTCCTTTGCTTGTCAGCCACAGGAAAGATGCATCTCCAAAATTAACAGAAACTCATGGAGATATATATGGCCAAAAGGCTGTTCACAGTGCAGGATTCCTTGATCACCAATCTGTATGGCGACCTCATAGAGGTCTTCCGGAGCGCGCCGTGACTGTCCTTAGGGCATGGCTGTTCGAGCACTTTTTGCACCCTTACCCTACTGATACTGACAAGCTAATGTTGGCTAAACAAACCGGTCTATCTCGTAACCAGGTGTCAAATTGGTTTATAAACGCTAGAGTAAGGCTGTGGAAACCAATGGTGGAAGAAATACATATGCTAGAAACAAGACAAGCTCAAAAGAATTCACAAAAGGATGATGAAAATCCCAAGAGATCAGCTGTTCATCTGGCTTCAAACTCGCTAGTGTGTGACAATCCATCCACTTCTGCTGATAGAGTTCATGATTACGCTTGCAAACGAAATGGGAATGAGCTTCCTGACATGCCTATGGGGAGACAGGATCAAATAAACCTGCCCTTCAATACCTTGTCAAGCACGCAACCTCTGGGTGTCACAGTGGGCATAGGTAGTGGGAGCAATGTCTCTTTGACTCTTGGTCTCCATCAGAATCATCATCACATTGGACTTTCAGAACCTTTTCCCGTAAGTGCAGCTCAACGTTTTGGCCTGACTCTTGAGCCCAATAATGAAGCCTATGCTATGGGTGGCTTTGATTCACAAAATCGACACTTTGGAAGAGATGTAATGGAAGGGCAACTTTTGCATGATTTTGTTAGATGA 1932 0.4451 MAEGVEAFHVPQQSRRDKLRVLGGGAGQTQQQGSPLTQPSSNHHLQVCSTSLLPLYDPTFVSNSNFPGHNFHGEMVSVTEESCKGQPTGCSSKVEGGGHNLMGFVGGTVHTGSSSSSSISHHPYLDPDTSLPINPGLIQVLNSNPFLYTSHNLREFHEQSYNGDEVMLYKPEPLSLSLSSQNTHHRYLPLELNPQRYGSTIYGDKANDGGYGIPGLYVGPSADSASNEVSRSSVPLGPLTGYASILKQSTFLKPAQQLLEELCYIGGNGIYSEKLTADVSLMEPPPRTDSLDSAVEAADDPLGCRDGGEARRKKSRLLTMLDEIYRKYKQYYQQMQAVVTSFECVAGLGNAAPYANLAVKAMSRHFRCLKDVISDQLQFTNKSPLLVSHRKDASPKLTETHGDIYGQKAVHSAGFLDHQSVWRPHRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLETRQAQKNSQKDDENPKRSAVHLASNSLVCDNPSTSADRVHDYACKRNGNELPDMPMGRQDQINLPFNTLSSTQPLGVTVGIGSGSNVSLTLGLHQNHHHIGLSEPFPVSAAQRFGLTLEPNNEAYAMGGFDSQNRHFGRDVMEGQLLHDFVR* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02388 643 SMART prehox3 240 375 IPR006563 -
Pte3g02388 643 SUPERFAMILY Homeodomain-like 424 489 IPR009057 -
Pte3g02388 643 FunFam BEL1-like homeodomain protein 9 425 487 - -
Pte3g02388 643 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 118 501 - -
Pte3g02388 643 Pfam Associated with HOX 245 374 IPR006563 -
Pte3g02388 643 Gene3D - 425 487 - -
Pte3g02388 643 Pfam Homeobox KN domain 439 478 IPR008422 GO:0003677|GO:0006355
Pte3g02388 643 MobiDBLite consensus disorder prediction 25 43 - -
Pte3g02388 643 SMART HOX_1 422 486 IPR001356 GO:0003677
Pte3g02388 643 MobiDBLite consensus disorder prediction 24 43 - -
Pte3g02388 643 ProSiteProfiles 'Homeobox' domain profile. 419 482 IPR001356 GO:0003677
Pte3g02388 643 CDD homeodomain 422 483 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02388 Pte-Chr3 43899210 43905061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02388 165 642 Homeobox Transcription Factor Family AT5G02030 46.169 1.45e-112 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte3g02388 POX 4.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02388 - - qsa:O6P43_026459 736.102