Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02371 ATGGCGTCAATTGGTACTTCTTCGTATTGGTGTTACAGATGCAATCGTTTCATTTCTGCCCGTGTTCATGGTCGAGAGACGATTCTATGCCCTGAATGTGGTTCTGGTTTTGTTGAAGAAATCAGAAGTCCTACTCGCTCACCCTTTAATAGATTCCCTCTGGAAACAATTCACGGTGTTAACAGGTTCGATTCCGAGCGAATTGGTAGTCCAAGAATGCGCTGGGTTCCTAGGAGTGGTGGGGATCGATCCCCCTTCAACCCTGTGATAGTGCTCCGTGGACCTTCTGAGGGTCGTGGAGTTGGAAATGGAAATGGAAATGATGCCGAAAGGGGAAATTTTGAGTTCTATTACGATGAGGGTACTGGTTCAGGAATTCGGCCTCTGCCTGCAAGTGTTTCTGAATTCTTGATGGGTTCCGGGTTTGACCGCTTACTTGATCAGTTAGCTCGATTGGAGGTGAACGGGTTTGGAAGGTTGGATCAACGGCAACCAGCATCTAAGGCAGCCATTGAATCAATGCCCGTTATCAAAATTGTTGCTGGCCATGTTTCCACTGAGTCAAATTGTGCAGTTTGTACAGAACCGTTTGAACTTGATATGGAAGCTCGTGAGATGCCTTGTAAGCACATTTATCATGCTGATTGTATACTTCCTTGGCTTTCTATTCGCAATTCATGTCCTGTGTGTCGTCACGAGTTACCTGCTGAACCTAAAGGGAGTGCAAGTAGTAGTGGTGGTGGAAACTCGCCAGTCTCTGATGAGGTTAGAGATGAGGATAGTGTGGGATTGACCATATGGAGATTGCCTGGTGGTGGTTTTGCTGTAGGGAGATTTACTGGGGGTAGACAAACTACAGACCGTGAACTTCCCGGTGTGTTTACTGAAATGGATGGCGGCTTTAGTACTAGTTCTACTGGTTTACCAAGAAGGAATGTATGGGATTTTAATGTCAGAAGTACGAGGGAGGCTCGTGGATTTAGTCGTGTATTCCAAAATGTTGTATCATTTTTTGGAAGGCTGGGGAATTCCTCCTCTCGTTCTTCTTCTGGGACAGTTCGAAGAACAATGTTCAATAGGTCTTCAAGGAGGCACGACTGA 1101 0.4596 MASIGTSSYWCYRCNRFISARVHGRETILCPECGSGFVEEIRSPTRSPFNRFPLETIHGVNRFDSERIGSPRMRWVPRSGGDRSPFNPVIVLRGPSEGRGVGNGNGNDAERGNFEFYYDEGTGSGIRPLPASVSEFLMGSGFDRLLDQLARLEVNGFGRLDQRQPASKAAIESMPVIKIVAGHVSTESNCAVCTEPFELDMEAREMPCKHIYHADCILPWLSIRNSCPVCRHELPAEPKGSASSSGGGNSPVSDEVRDEDSVGLTIWRLPGGGFAVGRFTGGRQTTDRELPGVFTEMDGGFSTSSTGLPRRNVWDFNVRSTREARGFSRVFQNVVSFFGRLGNSSSRSSSGTVRRTMFNRSSRRHD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02371 366 Pfam Protein of unknown function (DUF1117) 262 364 IPR010543 -
Pte3g02371 366 MobiDBLite consensus disorder prediction 343 357 - -
Pte3g02371 366 MobiDBLite consensus disorder prediction 235 257 - -
Pte3g02371 366 FunFam E3 ubiquitin-protein ligase RING1-like 152 237 - -
Pte3g02371 366 Pfam Ring finger domain 189 231 IPR001841 -
Pte3g02371 366 CDD RING-H2_RNF126-like 189 231 - -
Pte3g02371 366 SUPERFAMILY RING/U-box 170 236 - -
Pte3g02371 366 SMART ring_2 190 230 IPR001841 -
Pte3g02371 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 235 - -
Pte3g02371 366 MobiDBLite consensus disorder prediction 343 366 - -
Pte3g02371 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 237 IPR013083 -
Pte3g02371 366 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Pte3g02371 366 Pfam zinc-ribbon 8 41 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02371 Pte-Chr3 43693305 43695514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02371 128 239 C3H Transcription Factor Family AT5G01980 44.643 1.87e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02371 K11982 - qsa:O6P43_016745 477.633