Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02346 ATGGCTGCTGCTACAAATTGTCTGCTTTGCATTGCTTCACTGCTTTCGCTTCTTGTCCTCACCACTGCACGAATCCCCGGAGTTTATACTGGTGGCCCATGGCAGAATGCCCATGCTACTTTCTATGGCGGCAGTGATGCCTCTGGCACAATGGGTGGTGCTTGTGGGTATGGAAATCTGTACAGCCAAGGTTATGGAGTGAACACGGCTGCACTTAGCACAGCTCTGTTCAACAATGGCCTGAGCTGTGGTGCCTGTTTTGAGATCAAATGTGACCAAAGCCAGGACCCCAGGTGGTGCAACCCTGGCAACCCTTCAATCTTAATCACCGCCACCAACTTCTGCCCTCCCAACTTCGCTCTCCCCAGTGACAATGGTGGCTGGTGCAACCCACCTCGTCAACACTTTGATCTCGCCATGCCTATGTTCCTCAAGATTGCTCAGTACAAAGCTGGAATTGTCCCCGTCTCTTATAGAAGGATTCCATGCAGAAAGCAAGGAGGGATCAGATTCACCATTAACGGATTCCGTTACTTCAACTTGGTTTTGGTAACCAATGTCGCAGGTGCAGGAGATATCGTGCGCGTGAGCATTAAGGGTACCAACACGCAATGGTTGCCCATGAGTAGAAACTGGGGGCAAAATTGGCAATCAAACGCTGTCTTAGTGGGCCAGGCTCTGTCTTTTAGGCTTACAGGCAGTGACAGGCGCACCTCTACCTCTCTCAACGTGGCACCCGCTAATTGGCAGTTTGGTCAGACCTACACTGGGAAGAATTTCCGTGTCTAG 789 0.5108 MAAATNCLLCIASLLSLLVLTTARIPGVYTGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQSQDPRWCNPGNPSILITATNFCPPNFALPSDNGGWCNPPRQHFDLAMPMFLKIAQYKAGIVPVSYRRIPCRKQGGIRFTINGFRYFNLVLVTNVAGAGDIVRVSIKGTNTQWLPMSRNWGQNWQSNAVLVGQALSFRLTGSDRRTSTSLNVAPANWQFGQTYTGKNFRV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02346 262 Pfam Lytic transglycolase 69 158 IPR009009 -
Pte3g02346 262 SUPERFAMILY PHL pollen allergen 165 257 IPR036749 -
Pte3g02346 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 168 IPR007112 -
Pte3g02346 262 FunFam Expansin 168 260 - -
Pte3g02346 262 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 167 179 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 107 117 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 143 156 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 126 143 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 179 200 IPR002963 GO:0009664
Pte3g02346 262 PRINTS Expansin signature 93 104 IPR002963 GO:0009664
Pte3g02346 262 CDD DPBB_EXPA_N 33 163 - -
Pte3g02346 262 PANTHER EXPANSIN-A15 19 260 IPR002963 GO:0009664
Pte3g02346 262 SMART dpbb_1 69 158 IPR007112 -
Pte3g02346 262 Gene3D - 20 164 IPR036908 -
Pte3g02346 262 FunFam Expansin 23 164 - -
Pte3g02346 262 Gene3D - 168 260 IPR036749 -
Pte3g02346 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Pte3g02346 262 SUPERFAMILY Barwin-like endoglucanases 33 186 IPR036908 -
Pte3g02346 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Pte3g02346 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02346 Pte-Chr3 42835356 42837656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02346 8 263 Expansin Gene Family AT2G39700 80.469 1.29e-157 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02346 - - sind:105161605 486.108