Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02341 ATGAAGAAGTCATACCATTCCTCCACACCTTCTTCCTCAGTAGCTCCAGCTGCACCTCCTGCCCAGAAGAAGAAAAGGAACCAACCTGGAAACCCAAATCCAGATGCCGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGATTTATTTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAAGAGCCAAGGAGAAAGGTTTATCTGTGTCCTGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCTCTTGGCGACCTCACTGGCATCAAGAAACATTATTCTCGCAAACATGGTGAGAAAAAATGGAAATGTGATAAGTGCTCTAAGAGGTATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGACTTGTGGCACTAGAGAATACAGATGTGACTGTGGCACTCTCTTCTCTAGGCGAGACAGCTTTATCACCCATAGGGCCTTTTGTGATGCACTGGCTCAAGAAAGTCCAAGACAACCTCCAAATTTGAACACTACTCTTGGAAGCCATTTGTTTGGGAGTGGCAATGTGGGGTTAGGGTTATCGCAAGTGGGGCCTCAGTTATCTTCCATGCAAGACCAAACCAATCAGTCTAATGAGATCTTGAGGCTTGGTGGTACTCGGGCTGGACAGTTTGATGGTCTCCTTCCTTCACCTTTTCGTTCACAACAATCCATGCCTACCTCAGCTTTCTTCATGTCTACTGAATCAAACCCTAATTTTCATGATCACCCATCACAACAACAAGGTTTAATGCAAAACAAGTCGTTCCATGGGCTCATCCAAATGTCAGACATTCACAACAACACAGCTACTGATTCTCCTACTGGTGCTAATGTCTTTAACCTCCCGTTCCTCAATAACAATGCCAACAGCAATAATTCTAATCACAGAAACAATAGCAACCTGCCATCATCGGCATTGCTTATGTCCGATCATTTCAATGCTGGAAACGGTGGCGGTTCCGGTGACGGTGGAAACAATGAAGAGAACAATTTCTTTACTGGCAGTGTAATGGGAGATCAAAGCTCTAGTGTTCCTTCTCTTTACAGCACAAACAACAGTGCTGCCGCATCTACAGCCATTGCTCACATGTCAGCAACTGCACTGCTTCAGAAAGCAGCACAAATGGGCTCAACCTCAAGCAACAACACAACTGCTTCACTGCTTAGAAGCTTCGGGAGCTCATCAACATCGTCAAAATCTGATACCAGACCTCTAGTAGTCAACTCTGGAAATTATAGCGCCATGTTTGGTACGGGGAATGAGAATAACCTACAAGACTTGGTCAACTCTTTTGCCAATGCAGCATCAGGTAACTCTTCCATTTACGAAAATGCAACTGGTGGACTCCACGGTTTCAAAGGTTATGACGGAAATGGAAGAAATCTAGGGCATGCAGTTAGCGTTGGAGGATCTGATGGGCTAACGAGAGATTTCCTAGGTGTAGGTCAGATTGTGAGGAGTATGAGTGGAGGTGGTGTTTCACAGAGAGACCAACAACAGCTGCAACAACAACATGGGGTTGCCATCAATGCCTTGGATACTGAAAGAAATTCGGCGCCGTCAGCCCAAACTTTTGGAGGAGGAGGTGGAGGAAACTTTCACTGA 1692 0.4563 MKKSYHSSTPSSSVAPAAPPAQKKKRNQPGNPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESPRQPPNLNTTLGSHLFGSGNVGLGLSQVGPQLSSMQDQTNQSNEILRLGGTRAGQFDGLLPSPFRSQQSMPTSAFFMSTESNPNFHDHPSQQQGLMQNKSFHGLIQMSDIHNNTATDSPTGANVFNLPFLNNNANSNNSNHRNNSNLPSSALLMSDHFNAGNGGGSGDGGNNEENNFFTGSVMGDQSSSVPSLYSTNNSAAASTAIAHMSATALLQKAAQMGSTSSNNTTASLLRSFGSSSTSSKSDTRPLVVNSGNYSAMFGTGNENNLQDLVNSFANAASGNSSIYENATGGLHGFKGYDGNGRNLGHAVSVGGSDGLTRDFLGVGQIVRSMSGGGVSQRDQQQLQQQHGVAINALDTERNSAPSAQTFGGGGGGNFH* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02341 563 FunFam protein indeterminate-domain 5, chloroplastic-like 106 185 - -
Pte3g02341 563 FunFam protein indeterminate-domain 12-like 31 99 - -
Pte3g02341 563 Gene3D Classic Zinc Finger 106 183 - -
Pte3g02341 563 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 528 IPR031140 -
Pte3g02341 563 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Pte3g02341 563 SMART c2h2final6 52 74 IPR013087 -
Pte3g02341 563 SMART c2h2final6 128 148 IPR013087 -
Pte3g02341 563 SMART c2h2final6 93 123 IPR013087 -
Pte3g02341 563 SUPERFAMILY beta-beta-alpha zinc fingers 51 148 IPR036236 -
Pte3g02341 563 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Pte3g02341 563 MobiDBLite consensus disorder prediction 348 366 - -
Pte3g02341 563 MobiDBLite consensus disorder prediction 1 16 - -
Pte3g02341 563 Gene3D Classic Zinc Finger 33 99 - -
Pte3g02341 563 Pfam Zinc-finger double-stranded RNA-binding 52 74 IPR022755 -
Pte3g02341 563 MobiDBLite consensus disorder prediction 1 35 - -
Pte3g02341 563 MobiDBLite consensus disorder prediction 318 339 - -
Pte3g02341 563 MobiDBLite consensus disorder prediction 318 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02341 Pte-Chr3 42606411 42612205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02341 22 521 IDZ Gene Family AT2G02070 50.638 1.37e-141 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte3g02341 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02341 K25870 - jre:109006348 652.899