Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02336 ATGGAAATGAAGGAGAGGCAACGCTGGAGAGCTGAAGAAGACGCATTGTTAGCTGCATATGTTAAACAGTATGGTCCAAGGGAATGGCATCTCGTGTCACAGCGTATGAATACTCCTCTTAACAGGGACGCTAAATCCTGTTTGGAGAGGTGGAAAAATTATCTGAAACCTGGAATCAAGAAGGGATCTCTCACTGAAGAAGAGCAACGTCTTGTGATTCGTCTTCAAGCTAAACATGGCAACAAGTGGAAGAGAATTGCAGCTGAACTTCCAGGAAGAACTGCCAAGAGACTAGGGAAGTGGTGGGAAGTCTTCAAGGAAAAGCAAGAGAGGGAAAAGAAGGAGAACGCCAAAGCTGCAGACCCCATTGAAGAAGGGAAGTACGACCATATTTTGGAAACTTTTGCTGAGAAACTGGTAAACGATCGAGCTTCCCCATCTTATCTGATGGCTGCTTCCAATGGGGGATTTTTGCAGACTGATCCACCTTCTTCTGCATCGTCATCAATGCTTCCACCATGGCTTTCTAATTCTAGCGGTAGTACAGGCACGGGCAATGTAAGGCCGCCTCCATCTCCATCTGTGACTCTAAGCCTGTCTCCGTCAGCAGTTGCAGCTCCAATACCATGGCTGCAGCAGCAACCTGAGAGAGTTCAAGACACCAGTGCTCCTCTTGTTTTGGGAAACATGCCCCCTCACTGTTCTTTACCTACATGTGATAACATGGTCTTCTCTGAGTTGGCTGAATGTTGCAAAGAGTTGGATGAAGGCCACCGGGCTTGGGCAGCGCATAAGAAGGAGGCATCCTGGAGGTTGAGAAGGGTGGAGCTGCAATTGGAGTCAGAGAAAGCATGTCGAAGAAGGGAGAAGATGGAAGAAATTGAATCGAAGATTAAAGCTCTAAGAGAAGAACAGAAGGCTGCAATGGATATTATTGAAGCTGAATATAGAGAGCAGTTAGCAACGCTAAGGAGAGATGCAGAAAACAAGGAGCAAAAGCTGGCTGACCAATGGGCTGCAAAGCACTTGCGTCTCACTAAGTTTCTTGAGCAGATGGGTTGTCGTCCAAGGCTTTCTGAGTCAAATGGTCGATGA 1095 0.4703 MEMKERQRWRAEEDALLAAYVKQYGPREWHLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKRIAAELPGRTAKRLGKWWEVFKEKQEREKKENAKAADPIEEGKYDHILETFAEKLVNDRASPSYLMAASNGGFLQTDPPSSASSSMLPPWLSNSSGSTGTGNVRPPPSPSVTLSLSPSAVAAPIPWLQQQPERVQDTSAPLVLGNMPPHCSLPTCDNMVFSELAECCKELDEGHRAWAAHKKEASWRLRRVELQLESEKACRRREKMEEIESKIKALREEQKAAMDIIEAEYREQLATLRRDAENKEQKLADQWAAKHLRLTKFLEQMGCRPRLSESNGR* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02336 364 Gene3D - 6 60 - -
Pte3g02336 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Pte3g02336 364 MobiDBLite consensus disorder prediction 159 198 - -
Pte3g02336 364 Coils Coil 291 311 - -
Pte3g02336 364 ProSiteProfiles Myb-like domain profile. 1 55 IPR001005 -
Pte3g02336 364 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 3 360 - -
Pte3g02336 364 Pfam Myb-like DNA-binding domain 9 70 - -
Pte3g02336 364 Coils Coil 313 337 - -
Pte3g02336 364 FunFam MYB-related transcription factor 6 60 - -
Pte3g02336 364 CDD SANT 65 102 IPR001005 -
Pte3g02336 364 SUPERFAMILY Homeodomain-like 6 100 IPR009057 -
Pte3g02336 364 Gene3D - 64 123 - -
Pte3g02336 364 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pte3g02336 364 SMART sant 5 57 IPR001005 -
Pte3g02336 364 SMART sant 60 108 IPR001005 -
Pte3g02336 364 CDD SANT 8 55 IPR001005 -
Pte3g02336 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02336 Pte-Chr3 42512665 42516079 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02336 3 355 MYB Transcription Factor Family AT2G37630 68.478 1.58e-169 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte3g02336 Myb_DNA-bind_6 6.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02336 K09422 - qsa:O6P43_016767 555.829