Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02318 ATGTCCGAGGTTGAGCTTTCTCGCTCGGAGAAGAAGAAGAAGAAGCACCGTGACACTCCAACTGCCACGACTGATGTTACTACTGAATTCACCACTGAGCAAACCGATTTTATTAAGCCTCAGAGTTACAGTAAACCCGTTGATGCGTCTGAATGGCCATTACTGCTCAAGAACTACGATCGTCTCAATGTTCGTACCGGTCATTTCACTCCTCTCCCAACTGGGTTCTCACCACTTAAGCGCCCTCTAGCTGAATACATCAGGTATGGTATTCTAAACCTCGATAAGCCTTCTAATCCATCTTCACATGAGGTGGTGGCATGGATTAAGAGGATCCTAAGGGTTGATAAGACTGGTCATAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTAATAGTTTGTATAGATAGAGCTACAAGGTTAGTGAAATCACAACAGGGTGCAGGGAAAGAGTATGTCTGTGTTGCCCGATTGCATTCTACTGTGACTGATGTGGCTAAGGTGGCCCGGGCACTGGAGGCGTTGACTGGGGCTGTTTTCCAGCGGCCGCCTTTGATTTCTGCTGTCAAAAGACAGCTTAGAATCAGGACTATTTATGAAAGTAAGTTGCTTGAGTTTGACCCAGTGAAGAATTTGGTTGTTTTCTGGATTTCATGTGAGGCCGGGACTTATGTCAGGACAATGTGTGTTCATTTGGGTCTTCTTCTTGGTGTGGGAGGACATATGCAGGAGCTTAGGAGGGTCCGGTCTGGGATTTTGGGGGAGAAGGATAACATGGTGACCATGCATGATGTGCTGGATGCTCAGTGGGTATATGACAATTATAAGGATGAAACTTATCTTAGAAGGGTGATTATGCCACTTGAGAAGGTATTGACGAGTTACAAGAGATTGGTTGTGAAGGATTCTGCTGTGAATGCAATTTGCTATGGGGCGAAGTTGATGATTCCAGGGTTGTTGAGGTTCGAGAATGACATTGAGGTAGGGGAAGAAGTGGTGATCATGACAACCAAAGGTGAAGCGATTGCTTTGGGAATTGCAGAAATGACAACTGCAGTGATGGCAACCTGTGATCATGGGGTGGTTGCTAAGATTAAGAGGGTGGTGATGGATAGGGATACATACCCAAGAAAATGGGGATTGGGACCGCGTGCATCTTTGAAGAAGAAGCTAATTGCAGAGGGAAAATTGAGTAAACACGGGAAGCCAAATGAGAAAACCCCTGCAGAATGGATTAGAAATGTAGTTTTGCCAGCGGGGGGAGACAATGTGATTGCAGCTGCTGCTGCAGAACCAGCTCAGGAGAAGGAGGGCACCAATACCGAGGAAAAAGGAAAGGAGACTGCAGAGGGTCATAAGAGAAGGAAGGACAAAGAGACTGAAAGCCCTGATCCAGTCCCCAAAAAGAAAGCAAAAACTGAGAAAGCTGAAGAGGCTGTGAAGGAAGAAAAGGAAAAAGTGAAAAAGGTGAAGGAGGACCTAATGGATGGTGATGTTGAGAAGAAAGAAAAAAAGAAAAAAAAGGAGGATAAAGGGAGTGATGAAAAGAAGACTTTTAAGGAGGAGAAAACTAAGAAGGATAAGAAAAAGGATGGCGTTGAAGTTGTTTCTCCTGATACAGAGAAGACTGAGAAGAAAAAGAAGAAGAAAGACAAAGTGGCTGAAGATGGTGAAGATGGAAAACCTGCAGACACTGATAACGGCAATGCTGGTGCCGATGATGATAAAAGGGAGAAGAAGAAGAAGAAGAAAGACAAAAAGAAGACTAAAGATGCTGTTGACGACTAA 1791 0.445 MSEVELSRSEKKKKKHRDTPTATTDVTTEFTTEQTDFIKPQSYSKPVDASEWPLLLKNYDRLNVRTGHFTPLPTGFSPLKRPLAEYIRYGILNLDKPSNPSSHEVVAWIKRILRVDKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSTVTDVAKVARALEALTGAVFQRPPLISAVKRQLRIRTIYESKLLEFDPVKNLVVFWISCEAGTYVRTMCVHLGLLLGVGGHMQELRRVRSGILGEKDNMVTMHDVLDAQWVYDNYKDETYLRRVIMPLEKVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEVGEEVVIMTTKGEAIALGIAEMTTAVMATCDHGVVAKIKRVVMDRDTYPRKWGLGPRASLKKKLIAEGKLSKHGKPNEKTPAEWIRNVVLPAGGDNVIAAAAAEPAQEKEGTNTEEKGKETAEGHKRRKDKETESPDPVPKKKAKTEKAEEAVKEEKEKVKKVKEDLMDGDVEKKEKKKKKEDKGSDEKKTFKEEKTKKDKKKDGVEVVSPDTEKTEKKKKKKDKVAEDGEDGKPADTDNGNAGADDDKREKKKKKKDKKKTKDAVDD* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02318 596 ProSiteProfiles PUA domain profile. 296 371 - -
Pte3g02318 596 CDD PseudoU_synth_hDyskerin 88 270 - -
Pte3g02318 596 CDD PUA_Cbf5 295 369 - -
Pte3g02318 596 MobiDBLite consensus disorder prediction 430 596 - -
Pte3g02318 596 SUPERFAMILY PUA domain-like 296 377 IPR015947 -
Pte3g02318 596 MobiDBLite consensus disorder prediction 1 22 - -
Pte3g02318 596 Gene3D PUA domain 50 380 IPR036974 GO:0003723
Pte3g02318 596 SMART pua_5 297 371 IPR002478 GO:0003723
Pte3g02318 596 SMART DKCLD_2 48 106 IPR012960 -
Pte3g02318 596 Gene3D Pseudouridine synthase 82 288 - -
Pte3g02318 596 NCBIfam uncharacterized domain 2 286 368 IPR004521 GO:0003723
Pte3g02318 596 Pfam PUA domain 297 369 IPR002478 GO:0003723
Pte3g02318 596 MobiDBLite consensus disorder prediction 437 581 - -
Pte3g02318 596 MobiDBLite consensus disorder prediction 1 26 - -
Pte3g02318 596 Pfam TruB family pseudouridylate synthase (N terminal domain) 110 226 IPR002501 GO:0006396
Pte3g02318 596 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 56 381 IPR004802 GO:0006396
Pte3g02318 596 FunFam H/ACA ribonucleoprotein complex subunit CBF5 82 288 - -
Pte3g02318 596 Pfam tRNA pseudouridylate synthase B C-terminal domain 227 293 IPR032819 -
Pte3g02318 596 SUPERFAMILY Pseudouridine synthase 50 294 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Pte3g02318 596 Coils Coil 467 494 - -
Pte3g02318 596 Pfam DKCLD (NUC011) domain 50 106 IPR012960 -
Pte3g02318 596 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 10 546 IPR004802 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02318 Pte-Chr3 42306234 42309161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02318 1 474 NAC Transcription Factor Family AT3G57150 77.895 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02318 K11131 - qsu:111992989 750.74