Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02294 ATGGATGGACGTGAGGAAGAAATTGCTGAGCCATTTGTTTGCTGCGTTTGCCTGGATGTTTTGCACAAGCCAATTGTATTACCTTGCGGTCACATTTCATGCTTTTGGTGTGTACATAAGTCGATGGATAGTATTCGGGAATCTCATTGTCCAATTTGCAGACACACATACTATCATTTCCCTAATGTATGCCAAATGCTTCACTTTCTGCTCTTGAAGATGTACCCCCTTGCGTACAAGAGAAGAGACAGTCAAATGCTGGAAGAAGAAAGAGAAACAGGCCTTTTCTCACCTCAATTTGATAATGCTAGTGGATCACAAGTTGAGTCCCATAGTTTGGGCAGCTTGCCATCATCATCTGGTATGGATAATGAATCCAACTCATGCTCAGACCCTTTGTTGTCTGGGAATCAGAAAACCTCGCTGGACACAGAGCAATGTAGTTTAGTTACTGAAGTTAAAGATGAAGAAAAAGTACGTGGAAGATCAGAAGTCAGTGGGACTTTATCAGTTGAAGAAAGCAATCACAATGAGCAAAATGAATCAGTCTCAGTTGCTGATATGCTATGTACAGCATGCAATCAACTATTATTTCGTCCTGTTGTTCTTAATTGTGGTCATGCATACTGTGAAGTTTGTGTTATCAACCTATCTGACGAGGTGCTTAAATGTCAACTTTGTCAAAGTCCTCATCCAAGGGGAGTCCCAAAAGTGTGTTTACCAATTGATCAGTTCTTGCTGGAAAGATTTCCCAGTGAATATGCACGACGGAGAGACACTGTCCAACTCAATGAAGTCAAATGCAAATCTACCTCTTCGCAAAAGACCCCTGAAGAAGAGAGAGTACCGTGGTGGTCACATTCTAATTCAATTGTCCACTTTGGCATTGGTTGTGATTGTTGTGGGATCTATCCTATAGTTGGGGACAGGTACAGATGCAAAGATTGCGTTGAAAAGGTCGGTTTTGATCTTTGTGCTGATTGCTATAATGCTCAGTCCAAGCTTCCTGGTCGTTTCAATCAGCAGCACAGACCAGAACACGAGTTTGAGCATGTTCAATCAACAAATGTCATTGGTATGCTGAGACTGGTCAGCGGACCATTAGGGGGTCACATTGCCATTGTGGATGAGGCTTCACAAAATTCAGGAGTTGTATTTCAAGCTCCTGATTTGTCTGACATGAATGATGACGAGCATGAGGATGAGGCTGACACTAATAATTGA 1224 0.4216 MDGREEEIAEPFVCCVCLDVLHKPIVLPCGHISCFWCVHKSMDSIRESHCPICRHTYYHFPNVCQMLHFLLLKMYPLAYKRRDSQMLEEERETGLFSPQFDNASGSQVESHSLGSLPSSSGMDNESNSCSDPLLSGNQKTSLDTEQCSLVTEVKDEEKVRGRSEVSGTLSVEESNHNEQNESVSVADMLCTACNQLLFRPVVLNCGHAYCEVCVINLSDEVLKCQLCQSPHPRGVPKVCLPIDQFLLERFPSEYARRRDTVQLNEVKCKSTSSQKTPEEERVPWWSHSNSIVHFGIGCDCCGIYPIVGDRYRCKDCVEKVGFDLCADCYNAQSKLPGRFNQQHRPEHEFEHVQSTNVIGMLRLVSGPLGGHIAIVDEASQNSGVVFQAPDLSDMNDDEHEDEADTNN* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02294 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 257 IPR013083 -
Pte3g02294 407 SUPERFAMILY RING/U-box 284 351 - -
Pte3g02294 407 MobiDBLite consensus disorder prediction 388 407 - -
Pte3g02294 407 ProSiteProfiles Zinc finger RING-type profile. 190 228 IPR001841 -
Pte3g02294 407 PANTHER UNCHARACTERIZED 6 364 - -
Pte3g02294 407 Pfam Zinc finger, ZZ type 293 333 IPR000433 GO:0008270
Pte3g02294 407 SUPERFAMILY RING/U-box 185 231 - -
Pte3g02294 407 ProSiteProfiles Zinc finger ZZ-type profile. 293 357 IPR000433 GO:0008270
Pte3g02294 407 SUPERFAMILY RING/U-box 6 61 - -
Pte3g02294 407 SMART ring_2 190 227 IPR001841 -
Pte3g02294 407 SMART ring_2 14 53 IPR001841 -
Pte3g02294 407 ProSitePatterns Zinc finger RING-type signature. 205 214 IPR017907 -
Pte3g02294 407 SMART zz_5 292 338 IPR000433 GO:0008270
Pte3g02294 407 FunFam E3 ubiquitin-protein ligase PRT1 5 100 - -
Pte3g02294 407 Gene3D - 286 354 IPR043145 -
Pte3g02294 407 MobiDBLite consensus disorder prediction 98 141 - -
Pte3g02294 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 103 IPR013083 -
Pte3g02294 407 ProSiteProfiles Zinc finger RING-type profile. 14 54 IPR001841 -
Pte3g02294 407 Pfam Zinc finger, C3HC4 type (RING finger) 13 56 - -
Pte3g02294 407 FunFam E3 ubiquitin-protein ligase PRT1 287 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02294 Pte-Chr3 41924489 41930607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02294 5 54 C3H Transcription Factor Family AT1G74990 37.255 3.93e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02294 - - qsa:O6P43_026613 469.929