Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02277 ATGGAAGGTCGCCGGAGAATCACGTTACTGGATCAAATGTCAGACGTGGACGGCGGAAGACAATCGCTTGCTGGCTTAACACTAGACGACGTTTTACGCCTACAGAAAGCACCCCCACAAGCGCCACCACTACCACCACCAACTGCGGCATCGGGTCAGCCGGTGACCCGTCTGCTCAGAAATCAAACTCTGATTGACATAATCCAAGACGACCATTCCAATAAAAAAGAGAAAACCCCTTGGAAAGCTTTCAAGGATCGGCTTCTGAATAAGCGTTCTTCTACTACATGGACGTCATCGGTTCCTACTCCGATCTCGGATATCTCCATCCCCAACAAGAACAAAGGACCTCGAGCTTCGTCCAACAAGTCATCACGTAAAGGCAGTTTATGGTACGTGACGCCCGGGAACAATTCAGGTAGGCAGTTGAGTCCCAACATGAATCACAACGATTCTCCATCAGCTGGCGACAGCTCAAACTCGGCCACTACACGGCAGTTTTCTCGTATCGCTTCAACCCGGATCAATTCAAACAGATCCGACTCGACCCGGTTTGGTGACTCTTTCGATGCCGACGCTTCTTACGTCCCGGACCTCCTCCAGATTCCCCGCCATAATGCCACTCATCAGGTGCCAACGTCAGACCCCATGACACGTGAAAGACGCATTGCATCCAGAGGGGTCGACCCAGATGCCGCTGACTACAACGACCAACCGGACTCTCCAGAAGACCGAACTCTATCAGCCCGAGAAGCAGTACTAGCACAGGAAGCAGCAGAAGCGGCAGCGGCGGCATCTGCAGCAGAAGCAGAGGCGGCGGCATCTGCAGATGCAGGAGGAGGTGGAGGGCTGAAAATGTCGTTGATGGATTTACTGGAGGAAGAAGGTTTGAGTTACATGATGGATGACGATGATGACGATGAAGATTATGAGGATGAAGACGAAGATGAAGATAACATAGTTGAAGAGAAGGAGGAGACGAGCGTAGAGTACAATTGCTGCGTGTGCATGGTAAGGCATAAAGGCGCAGCTTTCATACCATGTGGACACGCATTTTGCAGGTTGTGTTCAAGAGAGCTTTATGCGACTAGAGGAAACTGCCCACTCTGCAACAATTTCATTGCAGAAATTCTCGACATTTTCTGA 1146 0.507 MEGRRRITLLDQMSDVDGGRQSLAGLTLDDVLRLQKAPPQAPPLPPPTAASGQPVTRLLRNQTLIDIIQDDHSNKKEKTPWKAFKDRLLNKRSSTTWTSSVPTPISDISIPNKNKGPRASSNKSSRKGSLWYVTPGNNSGRQLSPNMNHNDSPSAGDSSNSATTRQFSRIASTRINSNRSDSTRFGDSFDADASYVPDLLQIPRHNATHQVPTSDPMTRERRIASRGVDPDAADYNDQPDSPEDRTLSAREAVLAQEAAEAAAAASAAEAEAAASADAGGGGGLKMSLMDLLEEEGLSYMMDDDDDDEDYEDEDEDEDNIVEEKEETSVEYNCCVCMVRHKGAAFIPCGHAFCRLCSRELYATRGNCPLCNNFIAEILDIF* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02277 381 ProSiteProfiles Zinc finger RING-type profile. 333 371 IPR001841 -
Pte3g02277 381 PANTHER OS01G0917900 PROTEIN 19 381 - -
Pte3g02277 381 SMART ring_2 333 370 IPR001841 -
Pte3g02277 381 MobiDBLite consensus disorder prediction 226 247 - -
Pte3g02277 381 Pfam Zinc finger, C3HC4 type (RING finger) 331 375 - -
Pte3g02277 381 MobiDBLite consensus disorder prediction 300 323 - -
Pte3g02277 381 MobiDBLite consensus disorder prediction 94 164 - -
Pte3g02277 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 381 IPR013083 -
Pte3g02277 381 SUPERFAMILY RING/U-box 332 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02277 Pte-Chr3 41483179 41484596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02277 252 382 C3H Transcription Factor Family AT3G25030 49.624 6.03e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02277 - - twl:120006986 219.164