Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g02261 | ATGCCTATTCCAGAAGTGAACACGGTTTTGTTAGGGGAACTCGAAGCAATGGGATTCCCAAGAGCAAGAGCAGTTCGGGCTCTTCACTTCTCTGGTAATTCTACGATAGAGGATGCCATAAACTGGTTGATTGATCATGAGAATGACGCTGACATAGATGAGATGCCACTGGTAGATGTGGACATAATGATTGATTCTTCTCAAGAATTCTCTATCACTGAAGAAATGAGAATCAAAGCTCAGAAGCTGAGGTATGAAGCAAGAAAGAAGAAAGAGGACGAAGAAAATAAATTGAAAAAAGAAAGAGAAAAGGAGAGGATTAGTGCAGGCAAGCAACTCATTGAGGCTAAGAGAATTGCTGAAGAAAATGAAAGAAAAAGAAACATTGATTTACGGAAAGCAGAGAAAGAGGAAGAGAAAAGAGCAAGGGAAAAAGTTCTTAAGAAATTACAGCAAGATAAGGTGAACAGAAGGTCTATGCTTGGTTTACCATCGCAAGATCATGCAATAGTAAACACAAAATTTTCTATTCCTGAGGAGAACATGCAGCTGAAGCCTATCTACACAGATTCAAAGACTGAGCTATTGAGGGAAGCCTTGAGGTCTATCAAGAGGAATCACAAGGGTGAAGGTGGCAGAGTTAGAAAGGCCTATGAAACTCTCTTCATTTATGTTAGAAATGTTGTTAAAAATCCTGATGAGGAAAGATACAGGAAGATCCGAATTAGTAACCCTCTATTCCAGGATAGAGTTGGAAGTTTGGAAGGAGGGTTGGAATTTCTTGAGGTCTGTGGATTTGAGAGATTAGGAAATGATGAGTTCTTGTATCTTCCTCGTGATAAAGTTAACATGGCAATGCTAAACTCAGCTGGATCTTTGTTAATCTCAGCAATGACAAATCCCTTCTTTGGAGTTTTAAGCACACAAGCTTAG | 933 | 0.3934 | MPIPEVNTVLLGELEAMGFPRARAVRALHFSGNSTIEDAINWLIDHENDADIDEMPLVDVDIMIDSSQEFSITEEMRIKAQKLRYEARKKKEDEENKLKKEREKERISAGKQLIEAKRIAEENERKRNIDLRKAEKEEEKRAREKVLKKLQQDKVNRRSMLGLPSQDHAIVNTKFSIPEENMQLKPIYTDSKTELLREALRSIKRNHKGEGGRVRKAYETLFIYVRNVVKNPDEERYRKIRISNPLFQDRVGSLEGGLEFLEVCGFERLGNDEFLYLPRDKVNMAMLNSAGSLLISAMTNPFFGVLSTQA* | 311 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g02261 | 310 | Pfam | PUB domain | 214 | 283 | IPR018997 | - | |
| Pte3g02261 | 310 | SMART | uba_6 | 7 | 45 | IPR015940 | - | |
| Pte3g02261 | 310 | Gene3D | - | 198 | 296 | - | - | |
| Pte3g02261 | 310 | Gene3D | - | 8 | 53 | - | - | |
| Pte3g02261 | 310 | Coils | Coil | 119 | 153 | - | - | |
| Pte3g02261 | 310 | CDD | UBA_PUB_plant | 5 | 53 | - | - | |
| Pte3g02261 | 310 | SUPERFAMILY | UBA-like | 5 | 57 | IPR009060 | GO:0005515 | |
| Pte3g02261 | 310 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Pte3g02261 | 310 | SUPERFAMILY | PUG domain-like | 192 | 302 | IPR036339 | - | |
| Pte3g02261 | 310 | PANTHER | F13M7.16 PROTEIN | 1 | 306 | - | - | |
| Pte3g02261 | 310 | SMART | PGNneu | 216 | 279 | - | - | |
| Pte3g02261 | 310 | Coils | Coil | 84 | 108 | - | - | |
| Pte3g02261 | 310 | Pfam | UBA/TS-N domain | 12 | 43 | IPR015940 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g02261 | Pte-Chr3 | 40886470 | 40889682 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g02261 | 1 | 306 | C2H2 Transcription Factor Family | AT1G04850 | 56.169 | 1.24e-97 | 289 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g02261 | - | K24348 | qsa:O6P43_026650 | 401.749 |