Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02247 ATGGGGATACAGGGTCTTTTGCCACTAGTGAAATCGATTATGGTCCCAATACACATCAAAGATTTGGAGGGTTCTAACGTAGCCGTTGACACATACTCTTGGCTTCACAAAGGTGCTTTGTCTTGTAGCAGAGAGCTATGCAAAAGCCTACCTACTTCCAGGCACGTTGAATACTGCATGCGAAGAGTGAATTTGCTTAGACACTATGGTGTCAAACCAATTCTTGTATTTGATGGCGGTCTTCTACCGATGAAGATTGAGCAAGAGAACAAACGTTCCAGAACAAGGAAGGAAAATTTAGAACGTGCTGTTGAACATGAGAGAAGTGGCAATTCCGCTGCTGCATATGAATGCTACCAAAAAGCTGTTGATATATCACCCTCAATTGCACGAGAACTTATACAGGTGTTGAGGCAGGAGAACGTGAGTTATGTGGTTGCTCCTTATGAGGCAGATGCCCAAATGACATTCTTGGCGGTCACCAAGCATGTTGAGGCAGTAATAACTGAAGATTCAGATCTCATACCTTTTGGCTGCCCTAGAATTATCTTCAAAATGGACAAGTTTGGTCAGGCTGTTGAGTTCCAATACTCTACGCTACAAAAAAATAAGGAGCTGAATTTTGATGGATTCACGAGGCAAATGCTTCTTGAGATGTGTATTCTGAGTGGTTGTGATTATTTACCGTCACTGCCAGGAATGGGCCTGAAAAGGGCTCATGCTCTGATAAGAAAGTTCAAGAGTTATGAGAAGGTTTTGAAGCACTTGAGATTCAGCACAGTTTCAGTGCCTCCTTCATATGAAGATTCTTTCAAGAAGGCTGTGTTGACGTTTCAGTATCAGCGGGTTTATGATCCTCTAACTGAGGATATTGTCCACTTATCTGAGTTACCTGAAAGTGTTGGCGATGATATAGACTTCTTAGGACCATCTATGCCCAAATATATTGCCCAAGGCATAGCAAATGGGGACCTTGATCCATTTACCAAACAGCCATTTCAGGAACAAAGTCTAGATACTGGAATATCAACTCAAGGGATTTTATGCAGCAAAACTTTCAATCCTGAAAGTTCAAGGAAAAAATTAGATCTGCCAGTACAGAAGAATCTCTTGACCAACTATTTTTGCTTTGCTTCCCTTGAAGCAAAAAGGAAGTTTAAAGCACCCCGTAGATCCCCTGGTTCTCCAAGTCCATTGGACAACTCTTCTGCAAGTCCTGAGGTTCATGAAAATACCGGACATCATACTTGTGAAATGAATGGCTTCCTAACACTCCAACTTGATTCTCAGAATTCAGGGAATAGCACTCCTGATACGACAGGTAATTTTAGTGCTGATAATTCAGAATTAATAGAATTCCCACTGAATGATGTAAAGATAGAGGATGAAAGAAGCAGTCCGAAACAGACATTACTGCGTGAACCCAGGAACTCAATTCATAAGCCTTGCCTAACAATACAAAGGGAGCGTGAGTTTAAGAGCATGCAAGAAAATAGTTTTCAGGTCAAAATGGAAGTGGAGAGCAGAAAGGTTGTTAGGAGTCCTTATTTCCAGCAGAAGCCATTGCCTAAGAAAAATAAAGATGATGATCAATTTATTGACATCGTTGATGATCAAATAAATTTGAGTAAGAGCACCATCTCCAGATTTCAGGCCAAAATTGAAGTGGAGAAAAGAAAGGTTGTATTGAGCCGTTTTTTCCAACATAAGCCAGTGCCTAAGAACAACAAAGATGACAAGCAAGAGAACTTGAATGACGTGGTTGATGTTCAAATTAATTTGAATAAGAGCATTATCTCCCAAAGAGCACCAGATGGTAGCAATATAATGAACAAAGCATTGAAAAGGAAGACATCTCCCAACAACAATCTTATAAGGGGAAACTTTCGGCCAAAGCAAATGCATGTGCATACACCTATTCCTCATAATGGATGTTATGATACCAAGATGGACAAAGTAGTTAGAGAGTCAGAACCTCAAGATGAGAAGTTTGGTTCCAATATATCCCACTTAGGCCACTACTCAGAAGTCGCCACGGAATCTGTTGAAAGATTTGCCTCAATAATATCAAAATTCAAATGGACTCCTGGTTCACGTGTCAGTGGCCTCCGACCTCCTCTCAGAGATGTCAAGAACACCAAAACTAACACCAACACCACCACCACCACCACCAACAACAACAACCACAATCACAACCACAGCCACACCCACAACAGGTTAAAAGTTTTGGACTTCAGCCAGTTCGAATACGTGCCGCCCAACAAGAAACAGCGTTAG 2277 0.4128 MGIQGLLPLVKSIMVPIHIKDLEGSNVAVDTYSWLHKGALSCSRELCKSLPTSRHVEYCMRRVNLLRHYGVKPILVFDGGLLPMKIEQENKRSRTRKENLERAVEHERSGNSAAAYECYQKAVDISPSIARELIQVLRQENVSYVVAPYEADAQMTFLAVTKHVEAVITEDSDLIPFGCPRIIFKMDKFGQAVEFQYSTLQKNKELNFDGFTRQMLLEMCILSGCDYLPSLPGMGLKRAHALIRKFKSYEKVLKHLRFSTVSVPPSYEDSFKKAVLTFQYQRVYDPLTEDIVHLSELPESVGDDIDFLGPSMPKYIAQGIANGDLDPFTKQPFQEQSLDTGISTQGILCSKTFNPESSRKKLDLPVQKNLLTNYFCFASLEAKRKFKAPRRSPGSPSPLDNSSASPEVHENTGHHTCEMNGFLTLQLDSQNSGNSTPDTTGNFSADNSELIEFPLNDVKIEDERSSPKQTLLREPRNSIHKPCLTIQREREFKSMQENSFQVKMEVESRKVVRSPYFQQKPLPKKNKDDDQFIDIVDDQINLSKSTISRFQAKIEVEKRKVVLSRFFQHKPVPKNNKDDKQENLNDVVDVQINLNKSIISQRAPDGSNIMNKALKRKTSPNNNLIRGNFRPKQMHVHTPIPHNGCYDTKMDKVVRESEPQDEKFGSNISHLGHYSEVATESVERFASIISKFKWTPGSRVSGLRPPLRDVKNTKTNTNTTTTTTNNNNHNHNHSHTHNRLKVLDFSQFEYVPPNKKQR* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02247 758 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Pte3g02247 758 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Pte3g02247 758 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Pte3g02247 758 Gene3D - 1 207 - -
Pte3g02247 758 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Pte3g02247 758 MobiDBLite consensus disorder prediction 427 446 - -
Pte3g02247 758 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Pte3g02247 758 MobiDBLite consensus disorder prediction 699 736 - -
Pte3g02247 758 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Pte3g02247 758 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 448 IPR006084 -
Pte3g02247 758 MobiDBLite consensus disorder prediction 710 731 - -
Pte3g02247 758 FunFam Exonuclease 1, putative 1 207 - -
Pte3g02247 758 SMART xpgn3 1 99 IPR006085 GO:0004518
Pte3g02247 758 SMART xpgineu 138 208 IPR006086 GO:0004518
Pte3g02247 758 MobiDBLite consensus disorder prediction 395 410 - -
Pte3g02247 758 FunFam exonuclease 1 209 281 - -
Pte3g02247 758 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Pte3g02247 758 Gene3D - 209 281 - -
Pte3g02247 758 MobiDBLite consensus disorder prediction 386 415 - -
Pte3g02247 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Pte3g02247 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Pte3g02247 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Pte3g02247 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Pte3g02247 758 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pte3g02247 758 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02247 Pte-Chr3 40628389 40634677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02247 1 267 Core DNA Replication Machinery Family AT5G26680 27.915 4.05e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02247 K10746 - gmx:100798062 809.29