Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g02245 ATGAGCACTCAAGGGGTTAGAGGCCCAGCTATAAGAGAATGCCGGAGAAGGAAGGCTATATCAGAACTTGACCTTAATATAGCACCACCTAGCGAACGTCGCAATGAGGAAGGGGCTTCATCCCAAGGTGGGCTTCATGATGCTCAAGCTGGTGAAGGACAGCAGGTTCCAATGCCTCCAACGATTGATGTGGAAGCTTTCGATGATGATGTTATTGAATCATCTCCCAGAGCCTTTGCTGAAGCTAAGAACAATTCAAGGAGGAGTCGTGGGAGAACCATAGTTGACGTTGATTTAGAAGATCAGTTTAGGGTCACAAACAACCGTAACAAACGAGGAAGAGAGTCGTCAAATTGGCAAATAATCAATTGTGATCTTTACATAAACTTGGAGAGTACTGCCTTTTCTAAGATACAGAATGTTGTTGATAGATCATCTCCGATTCCTCCCCCGAAAGAGGCCATTTTTAACTGTCCAATATGTATGGGACCATTAGTGGAGGAAATGTCAACGAAGTGTGGTCACATTTTCTGTAAAGAATGCATTAAGGCTGCAATAAGAGCACAGGGTAAATGTCCTACATGCAGGAAAAAGATTACAATGAAGGAGCTAATTAGGGTGTTCCTTCCAGCAGCTAGTTGA 642 0.4346 MSTQGVRGPAIRECRRRKAISELDLNIAPPSERRNEEGASSQGGLHDAQAGEGQQVPMPPTIDVEAFDDDVIESSPRAFAEAKNNSRRSRGRTIVDVDLEDQFRVTNNRNKRGRESSNWQIINCDLYINLESTAFSKIQNVVDRSSPIPPPKEAIFNCPICMGPLVEEMSTKCGHIFCKECIKAAIRAQGKCPTCRKKITMKELIRVFLPAAS* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g02245 213 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 - -
Pte3g02245 213 SUPERFAMILY RING/U-box 153 208 - -
Pte3g02245 213 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Pte3g02245 213 SMART ring_2 158 195 IPR001841 -
Pte3g02245 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 212 IPR013083 -
Pte3g02245 213 MobiDBLite consensus disorder prediction 22 59 - -
Pte3g02245 213 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Pte3g02245 213 PANTHER ELFLESS, ISOFORM B 6 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g02245 Pte-Chr3 40589405 40597576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g02245 1 212 C3H Transcription Factor Family AT5G48655 48.372 1.73e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g02245 K22651 - qsa:O6P43_026661 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g02245 3 40589405 40597576 Pte3g02245 3 40589405 40597576 RCT